cnga1a (LOC106602752)


Basic Information

Item Value
gene id cnga1a
gene name LOC106602752
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 55266623 ~ 55277393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619111.2
CGCAGATTTACCCTCTGTGTTTTCAGACAAAGGAAATAGGGCGGGGATAGGAAgccactttagactattgagatggcCCTTGTGTATCAGCAGCAATCCCAGAGTTTCAAAGCGTCACACCCCCACTTGATGTTTTGTTATGACAGCGTGAGAAGCTGTGAAAGGGAAGATcaatttctgtgttttgtgtattgTTGGATGGATGAGGCAACTTGATGTATTTGACTATTTATTGTCAAATAAAATGCATTCATTCTGGAGTGGTGCCGCAAAGGGCCCTAAACATAGAaagggagtggaggagggtgaCCGCCCTGAGACTTTGCCACCACAGCCACTTTCATCCAGCTCCATAATCCTCAAATCCCACTCAGGGTCAGTCAGGAGGACTCAATGACACCACACCACCCATGCTTATTTTGTATCCATTCATCAAATTAGCTGTATATCGGTGTGATATATAACTTGAAAGGCTGTTCATCTATATTTACATTACACTTGGATTAAGTGTCTGTGTGGAGTGGGAACTCTAGGACTGCTTATCTTGAGGTCTGTGATGACTATGGACAGTGCACTATGCTGACTAGAGGTAAAGGCTACCCAGATTGGCTGCCATGATCAGCACATCAAGCACTCGTCCGTTCCTGGCGGTTGCGCCTCGCATTTCTCCAAACATGGCcacagacacagaggaggacagtGAGGATGAAATAGATGAAACCTCTCCTGGCCCAGGGCGTCTGTTCAATGTgaacaacagtaacaacactGAGGAGgaggagaagaaaaagaagaaaaaggagaagaaagaaaagaaagagaaaaaagagaaaaagaaagaaaagaagaaGCAGAAAGAGCAggaggagaaagaaaaggaggagaaagaaaaggaggagaaagaaaaggaggagaaagaaaaaaaggaaaaagaggaaaaggagaaaaaggagaaagagaaaaaggaggGGCCCAAAGAAGGGTTTTTCATCAATCCAGCGGGCAGTCTGTACTACAACTGGCTGTTCATTATCACAATACCAGTCATGTACAATTGGACCATGATAATAGCCAGGGCCTGCTTTGAGGAGCTGCAGCATAATCACCTAGTCACCTGGATGATTCTGGATTACATCTCTGATGTCCTCTACCTGGCTGACATGGCCTTCAGGACCAGGAcagCCTACCTGGAGCAAGGCCTGCTGGTCAAAGACAAGAAGCTGCTGTTGGAGCGTTATATCAGCAGCCTCCAGTTCAAGCTGGACGCTGTCTCCATGCTGCCCACCGATGTGTTTTACATCTACCTGGGGATCAACTACCCCGAGATCCGCCTCAACAAGCTCCTCCGAATCACGCGTATGATGGAGTTCTTCACCCGCACCGAGACCAAGACCAACTACACCAACCTCTTCCGCATCTCCAACCTGGTCatgtacatcatcatcatcatccactGGAACGCCTGCCTCTACTACTCCTTCTCTAAGTCCATCGGCTTCGGCTCTGACCCCTGGGTCTACCCGGACCTGAATGACCCAGAAGAGCCAGAGTTTGGGGAACTGGGGAGGAAGTACTCCTTCAGCCTCTACTGGTCCACGCTGACGCTGACCACCATCGGCGAGACGCCATCACCGGAGCTGGACTCAGAGTTCTTCTTCCATGTGCTGGACTTCCTTGTGGGTGTGCTTATCTTCGCCACCCTGGTGGGCAACATCAGCTCCATGATCTCCAACATCAGCGCCGCGCGGGTCGAGTTTCAGGCACGCATCGACAACATCAAGCAGTACATGCAGAAGTGGAAGGTGGACAAGGAACTGGAGCTGCGAGTCATCACGTGGTTCGACTACCTGTGGACCAACGACAAGGCTCAGGACGAAAGGGAGACGCTGCGGTACCTGCCCGACAAGCTCAGGGCCGAAATCGCCATTAACGTCCACCTGGATACTCTCAAGAAGGTCCGCATCTTCGCTGACTGCGAAGCAGGCCTGCTTATTGAGCTGGTGCTCAAGTTGCAGCCTCAGGTCTTCAGCCCTGGCGACTACATCTGTAAGAAGGGCGACATCGGCCGTGAGATGTATATTGTCAAGGAGGGCAAGCTGGCGGTGGTGGCTGACGATGGCGTCAAGCAGTTCTGCGTGCTGGGAGACGGCAGCTACTTTGGGGAGATTAGTATCCTAGCGATAAAGGGTTCTAAGGCAGGGAACCGGAGGACGGCCAACATCCGCAGCATTGGCTACTCAGATCTCTTCTGCCTGTCCAAGGATGACCTGATGGAGTCATTGACCGAGTACCCGGAAGCCAAGGGCATGCTGGAGGAGAAAGGTCGTCAGATCCTGCTGAAGGACGGCCTGCTGGAACTGGACCCTTCCAAAATTATCCCCGAAACCACAGAAATCGAGGAAAAGgtGAACCGCATGTACAGCAACCTGGAGTTGATGCAGACCAAGCTGAAGAAGCTGCTGGGAGACTACAGCACCAGCCAGAGGGCCACGAGGGAACGCATCGCTGAGATAGAGAGGCTGACTGGAGAGGTTGTAGCAGAGGAGGACCtagatgaggaggagaaggagggaggggaggaggagaaggagggaggggaggaggagaaggagggaggggaggaggagaaggagggaggggaggcagAAGAGAAGAAGgatgaggagaagaaagaggaggaggaggaggaggaggaggaggaggagaagaagtagAGTTTTTGTGAGATAAAAACAAACACTTTTTTTGTGTGGTCTTAACACAATTTGAGCTAACTGGATATAGACCATTAGAAAAATAAAAACTGCTTGAATATTGGTTAAAACAAAAGGCTATTTTTTCTGGTTGAAGGGTTTTCAGCTTTTGGGAAATCTATGATTATTGAAAGCTGATGTAACAGACTTATTACACTATTTTTATTAAGATAATTCAACTACTAGAGGGCACCAGAGGCCATAAAACTACATGTATCACTTTCACACTggtcttttttaaatgtttggacCCCATGTGTAACACACAAATTGTCTGTTGGAGTGATCTCTACCTGATAGACAGATCACCTGCAAAGATGGAGCATTTTGTGTACTCACCTTTGGTTATAACTAAGTATGATCgcataaaaaaatctaaattgccTTAGATATATGCTTATTTGCAGTAAAAACAGCTCAAAAATGTCTGTCAATGGCATAAATACTTGGTAGAACTGTGAACTGTGCTGTATTGGTGTGTAGTcatcttaaataagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacagtgccttg

Function

NR:

description
PREDICTED: cyclic nucleotide-gated channel rod photoreceptor subunit alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619111.2 True 3314 mRNA 0.48 11 55266623 55277393
Loading

Neighbor

gene id symbol gene type direction distance location
tmem131l LOC106602747 coding upstream 123073 55043454 ~ 55143550 (+)
LOC110534317 mnd1 coding upstream 224587 55015580 ~ 55042036 (+)
trim2a LOC106602744 coding upstream 252068 54948390 ~ 55014555 (+)
fhdc1 LOC106602742 coding upstream 356408 54845361 ~ 54910259 (+)
arfip1 arfp1 coding upstream 436753 54796229 ~ 54829870 (+)
LOC110533148 tacr3 coding downstream 39057 55316450 ~ 55356923 (+)
LOC110534323 LOC106602753 coding downstream 137119 55414512 ~ 55436186 (+)
suclg1 LOC106602756 coding downstream 168501 55445894 ~ 55467323 (+)
LOC118936709 NA coding downstream 705239 55982632 ~ 55984568 (+)
LOC110534327 LOC106602758 coding downstream 896039 56173432 ~ 56177148 (+)
G904651 NA non-coding upstream 1527 55264604 ~ 55265096 (+)
G904646 NA non-coding upstream 9644 55256747 ~ 55256979 (+)
G904643 NA non-coding upstream 11632 55254774 ~ 55254991 (+)
G904639 LOC106602751 non-coding upstream 16410 55249880 ~ 55250213 (+)
G904636 NA non-coding upstream 20229 55245979 ~ 55246394 (+)
G904633 NA non-coding downstream 3121 55280514 ~ 55282713 (+)
G904657 NA non-coding downstream 11247 55288640 ~ 55289062 (+)
G905169 NA non-coding downstream 247418 55524811 ~ 55525104 (+)
G905171 NA non-coding downstream 248917 55526310 ~ 55526540 (+)
G905174 LOC106611607 non-coding downstream 250312 55527705 ~ 55527920 (+)
G904621 LOC106567469 other upstream 35368 55230899 ~ 55231255 (+)
helt helt other upstream 1287351 53977386 ~ 53980090 (+)
G902840 LOC106602714 other upstream 1591812 53670120 ~ 53674811 (+)
G902707 NA other upstream 1746835 53516107 ~ 53519788 (+)
LOC110534253 hinfp other upstream 2730973 52532434 ~ 52542498 (+)
G904663 NA other downstream 17844 55295237 ~ 55296054 (+)
G906606 LOC100136012 other downstream 1378906 56656299 ~ 56656552 (+)
LOC110534329 LOC106602762 other downstream 1712611 56953710 ~ 56991150 (+)
LOC110534333 LOC106602771 other downstream 1875371 57142719 ~ 57206820 (+)
LOC110534354 NA other downstream 2391189 57645943 ~ 57671502 (+)

Expression

cnga1a(LOC106602752) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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cnga1a(LOC106602752) Expression in each Bioproject

Bar chart with 9 bars.
cnga1a(LOC106602752) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5000.
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Co-expression Network