Gene
RNA
| Item | Value |
|---|---|
| gene id | suclg1 |
| gene name | LOC106602756 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 55445894 ~ 55467323 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Succinyl-CoA ligase subunit alpha, mitochondrial precursor, partial |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0003878 | ATP citrate synthase activity | molecular_function |
| GO:0004775 | succinate-CoA ligase (ADP-forming) activity | molecular_function |
| GO:0048037 | obsolete cofactor binding | molecular_function |
| id | description |
|---|---|
| K01899 | LSC1; succinyl-CoA synthetase alpha subunit |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001160498.1 | True | 1446 | mRNA | 0.52 | 9 | 55445894 | 55467323 |
55,440,000
55,444,000
55,448,000
55,452,000
55,456,000
55,460,000
55,464,000
55,468,000
55,472,000
55,476,000
55,480,000
55,484,000
NC_048574.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110534323 | LOC106602753 | coding | upstream | 9708 | 55414512 ~ 55436186 (+) |
| LOC110533148 | tacr3 | coding | upstream | 88971 | 55316450 ~ 55356923 (+) |
| cnga1a | LOC106602752 | coding | upstream | 168501 | 55266623 ~ 55277393 (+) |
| tmem131l | LOC106602747 | coding | upstream | 302344 | 55043454 ~ 55143550 (+) |
| LOC110534317 | mnd1 | coding | upstream | 403858 | 55015580 ~ 55042036 (+) |
| LOC118936709 | NA | coding | downstream | 515309 | 55982632 ~ 55984568 (+) |
| LOC110534327 | LOC106602758 | coding | downstream | 706109 | 56173432 ~ 56177148 (+) |
| LOC110534937 | NA | coding | downstream | 1207391 | 56674714 ~ 56676532 (+) |
| LOC110534328 | NA | coding | downstream | 1220362 | 56687685 ~ 56693360 (+) |
| LOC118936710 | NA | coding | downstream | 1232935 | 56700258 ~ 56707998 (+) |
| G904657 | NA | non-coding | upstream | 156832 | 55288640 ~ 55289062 (+) |
| G904633 | NA | non-coding | upstream | 163181 | 55280514 ~ 55282713 (+) |
| G904651 | NA | non-coding | upstream | 180798 | 55264604 ~ 55265096 (+) |
| G904646 | NA | non-coding | upstream | 188915 | 55256747 ~ 55256979 (+) |
| G904643 | NA | non-coding | upstream | 190903 | 55254774 ~ 55254991 (+) |
| G905169 | NA | non-coding | downstream | 57488 | 55524811 ~ 55525104 (+) |
| G905171 | NA | non-coding | downstream | 58987 | 55526310 ~ 55526540 (+) |
| G905174 | LOC106611607 | non-coding | downstream | 60382 | 55527705 ~ 55527920 (+) |
| G905178 | LOC106611608 | non-coding | downstream | 62334 | 55529657 ~ 55529883 (+) |
| G905179 | NA | non-coding | downstream | 64056 | 55531379 ~ 55531624 (+) |
| G904663 | NA | other | upstream | 149840 | 55295237 ~ 55296054 (+) |
| G904621 | LOC106567469 | other | upstream | 214639 | 55230899 ~ 55231255 (+) |
| helt | helt | other | upstream | 1466622 | 53977386 ~ 53980090 (+) |
| G902840 | LOC106602714 | other | upstream | 1771083 | 53670120 ~ 53674811 (+) |
| G902707 | NA | other | upstream | 1926106 | 53516107 ~ 53519788 (+) |
| G906606 | LOC100136012 | other | downstream | 1188976 | 56656299 ~ 56656552 (+) |
| LOC110534329 | LOC106602762 | other | downstream | 1522681 | 56953710 ~ 56991150 (+) |
| LOC110534333 | LOC106602771 | other | downstream | 1685441 | 57142719 ~ 57206820 (+) |
| LOC110534354 | NA | other | downstream | 2201259 | 57645943 ~ 57671502 (+) |
| ankrd49 | LOC106602680 | other | downstream | 2989659 | 58456982 ~ 58517975 (+) |
