Item | Value |
---|---|
gene id | LOC110534381 |
gene name | cldnd |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048574.1 |
NCBI id | CM023228.2 |
chromosome length | 87811138 |
location | 59401708 ~ 59408944 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
cldnd | Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in gill; gonad; integument; kidney; and muscle. Human ortholog(s) of this gene implicated in ovarian cancer and pancreatic cancer. Orthologous to several human genes including CLDN4 (claudin 4). |
description |
---|
claudin domain-containing protein 1-like |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021619224.2 | False | 3492 | mRNA | 0.44 | 5 | 59401708 | 59408944 |
XM_021619223.2 | False | 3494 | mRNA | 0.44 | 5 | 59401709 | 59408944 |
TU1034345 | True | 3785 | TUCP | 0.44 | 4 | 59401942 | 59408943 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118936720 | NA | coding | upstream | 43479 | 59354803 ~ 59358229 (+) |
LOC118966643 | NA | coding | upstream | 373720 | 59021745 ~ 59027988 (+) |
LOC118966642 | NA | coding | upstream | 381052 | 59009931 ~ 59020656 (+) |
LOC118966641 | NA | coding | upstream | 392526 | 58947630 ~ 59009182 (+) |
LOC110534375 | NA | coding | upstream | 502070 | 58872465 ~ 58899638 (+) |
LOC110534383 | LOC106602667 | coding | downstream | 21257 | 59430201 ~ 59455276 (+) |
LOC110533170 | LOC106602661 | coding | downstream | 73672 | 59482542 ~ 59494276 (+) |
LOC110534395 | LOC106602650 | coding | downstream | 103477 | 59512421 ~ 59523171 (+) |
LOC110534399 | LOC106602650 | coding | downstream | 131336 | 59540280 ~ 59544449 (+) |
LOC110534401 | NA | coding | downstream | 135607 | 59544551 ~ 59546535 (+) |
G909434 | LOC106609985 | non-coding | upstream | 12774 | 59369934 ~ 59388934 (+) |
G909432 | NA | non-coding | upstream | 33567 | 59367925 ~ 59368141 (+) |
G909430 | NA | non-coding | upstream | 35087 | 59366367 ~ 59366621 (+) |
G909368 | NA | non-coding | upstream | 131303 | 59260930 ~ 59270405 (+) |
G909290 | NA | non-coding | upstream | 219882 | 59181537 ~ 59181826 (+) |
G909454 | NA | non-coding | downstream | 1307 | 59410251 ~ 59410505 (+) |
G909455 | NA | non-coding | downstream | 1952 | 59410896 ~ 59411179 (+) |
G909459 | acy3 | non-coding | downstream | 11085 | 59420029 ~ 59421194 (+) |
G909464 | NA | non-coding | downstream | 19072 | 59428016 ~ 59428436 (+) |
G909504 | NA | non-coding | downstream | 53245 | 59462189 ~ 59530772 (+) |
ankrd49 | LOC106602680 | other | upstream | 883733 | 58456982 ~ 58517975 (+) |
LOC110534354 | NA | other | upstream | 1730252 | 57645943 ~ 57671502 (+) |
LOC110534333 | LOC106602771 | other | upstream | 2196622 | 57142719 ~ 57206820 (+) |
LOC110534329 | LOC106602762 | other | upstream | 2410716 | 56953710 ~ 56991150 (+) |
G906606 | LOC100136012 | other | upstream | 2745156 | 56656299 ~ 56656552 (+) |
G909581 | NA | other | downstream | 215807 | 59624751 ~ 59638698 (+) |
G911148 | LOC106602559 | other | downstream | 1333360 | 60742304 ~ 60755677 (+) |
LOC110533174 | LOC106602527 | other | downstream | 1742320 | 61146124 ~ 61185835 (+) |
G911611 | LOC106609905 | other | downstream | 2157413 | 61566357 ~ 61569062 (+) |