LOC110534401


Basic Information

Item Value
gene id LOC110534401
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 59544551 ~ 59546535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475120.2
tcgcactattggttagagcctgtaagtatgcatttcactgtaaggtctacctacacctgttgttttcggcgcacgtgacaaataaactttgatttgatttgctgctaTCCTCAGACTGCACCCCAACAAGCTGCAGGTCCTCGGTAATGTTGCCCTccatttaaaatgtttaaattgTGTCACCCCAAATTCAACTAATCAACAATAACGTCGtaaatctgtttgtgctgttgcCAACTTCTTTTGTCCTTGTTCATTCGCTGTCTGGCAGATTTAGACTAGGCAAAACCAGTGATTATTTTTATTGAGTGTGGTATTCCTGGGCTAAAACTAAATGTGTACACTGTCGTGTTGCCCCTGGAATGATTGTGAAGTAGACCAAATTATCTACCCCCACAAAATAGTTTGAGAAAGTCATCTGTGTGTTACCATGTCCTGTAGGTGACTGCTGGTCCGCATTGAAGCGCTCTCTCATGCCCAAGCACATTGGGGTGTGGAAGAAGGCCCTGTCTGTGATTTTGACAAGGAAACATATTCTACGCACCTGTGACCCAAGGATCAAACACCACACAATTTTTCCCCCCGATGTTCACAACATGGACAGCTATTTATTTATGATACACATTTAATTGCACATTTCCATTCAGTGTGCAATTAATGAAGTAGCTGTCTAACCCCGGGGTCTCAAGTGAAGCTGGGCGCCATTTCACAGGAACAACTGCCTTATAGTCGCACGCAGCTAGCTGTTAGGATGTTACTCCATCTCCTCTTTTCCGTGGATGGATTCCAATAGCTCGTAAGATAGCTTTAGGCTCTGTGGCTGCTCACAGCCTTGATCTCTCTAGCCTCCAGACCTGCATCAGAGAGCTGCTGGATGTTAGTCGTCTTGATGCAGTGGTTGGTATACCTACGGGATGTGCCggcctcctagagagagagagcgagcaattAATAATAGCAATATGACAATGATTCTATTAATGTTTATTCTATTCATATAACTGTATAGCAGCCTAGCTATTTGAACAAAATGGTATACCTTGCACAGACAGGGCAGCATTGATGAAAGGATGTTGAGTCCCATTGGCTCTGTGGTATACCACAACGTTGTCGTTGGATAGCTTTCGTCTGGTTAACAATGGGAATTCCAAACCACCCGCTTCATAACACTATATATGGCGGAAATGTCACCTATCAAAGGGCAAGATGGAGCCTATTAGACAAGTGTCCTggggttgatttgggattcaTGGTGAACATGTTCTGCAACCTGGCTAAAATGTTTTGATGCATTGATTTGAAAAGTAGTTTGAATGGTGTCAAGTGTCTATTGCTTCACCATTTATTAATTGAGGGCATTTCCCCCCTAGAACACTGTGTATGAAGGAGAGTACCATGCTGGGCATCCCAACATCGTCACATTCTGGGAGGTGTTTGAGGAACTGACAGAGGATCAAAAGAAAGCGTTCCTGTTGTTCCTGACTGGCTGTGATCGTGTGCCCATCCTGGGTATGAACCAGATCAGGATGAGGGTCCAAACCCTTCTCAACTCCTCCCAACAGCATTTCCCAGAGGCGCTGACCAACACTCTCTGTTGCAGCTGCCCATCTACCCCTCCAAAGAGACACTACAGAGCAGGCTTATAGAAGCTGTTGGCCACAACAGAGGCTTCTGGAATGAATAATGGGTGTATAGTGTTGCTGCTGTGTATAGTCCTCTCCTGTGTTCATCTTTTCATTGTTCCATAGTTGGGTTTAAGATTTGGATTGTTTTAATGTAGGGTTGTATTtcaaatcctaacttgagatctgTGCGGTACTATGACATTATCATATTGCATTCACaattttattaaaacatttataaatcaaaaa
>TU1034425
TGGGAATTCCAAACCACCCGCTTCATAACACTATATATGGCGGAAATGTCACCTATCAAAGGGCAAGATGGAGCCTATTAGACAAGTGTCCTggggttgatttgggattcaTGGTGAACATGTTCTGCAACCTGGCTAAAATGTTTTGATGCATTGATTTGAAAAGTAGTTTGAATGGTGTCAAGTGTCTATTGCTTCACCATTTATTAATTGAGGGCATTTCCCCCCTAGAACACTGTGTATGAAGGAGAGTACCATGCTGGGCATCCCAACATCGTCACATTCTGGGAGGTGTTTGAGGAACTGACAGAGGATCAAAAGAAAGCGTTCCTGTTGTTCCTGACTGGCTGTGATCGTGTGCCCATCCTGGGTATGAACCAGATCAGGATGAGGGTCCAAACCCTTCTCAACTCCTCCCAACAGCATTTCCCAGAGGCGCTGACCAACACTCTCTGTTGCAGCTGCCCATCTACCCCTCCAAAGAGACACTACAGAGCAGGCTTATAGAAGCTGTTGGCCACAACAGAGGCTTCTGGAATGAATAATGGGTGTATAGTGTTGCTGCTGTGTATAGTCCTCTCCTGTGTTCATCTTTTCATTGTTCCATAGTTGGGTTTAAGATTTGGATTGTTTTAATGTAGGGTTGTATTtcaaatcctaacttgagatctgT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475120.2 False 1874 mRNA 0.43 2 59544551 59546535
TU1034425 True 673 lncRNA 0.45 2 59545690 59546473
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534399 LOC106602650 coding upstream 102 59540280 ~ 59544449 (+)
LOC110534395 LOC106602650 coding upstream 21380 59512421 ~ 59523171 (+)
LOC110533170 LOC106602661 coding upstream 50275 59482542 ~ 59494276 (+)
LOC110534383 LOC106602667 coding upstream 89275 59430201 ~ 59455276 (+)
LOC110534381 cldnd coding upstream 135607 59401708 ~ 59408944 (+)
trnat-agu-3 NA coding downstream 3148 59549683 ~ 59549756 (+)
LOC110534398 LOC106602548 coding downstream 8091 59554626 ~ 59557594 (+)
LOC110534404 LOC106602550 coding downstream 95445 59641980 ~ 59648505 (+)
LOC110534405 LOC106602553 coding downstream 113075 59659610 ~ 59697075 (+)
LOC118937067 NA coding downstream 426569 59973104 ~ 59973159 (+)
G909485 NA non-coding upstream 8126 59503760 ~ 59536425 (+)
G909504 NA non-coding upstream 13779 59462189 ~ 59530772 (+)
G909469 NA non-coding upstream 15582 59526357 ~ 59528969 (+)
G909468 LOC106602664 non-coding upstream 39132 59466432 ~ 59505419 (+)
G909543 NA non-coding downstream 47921 59594456 ~ 59607256 (+)
G909578 NA non-coding downstream 73014 59619549 ~ 59620943 (+)
G909544 NA non-coding downstream 102568 59649103 ~ 59649878 (+)
G909588 NA non-coding downstream 107576 59654111 ~ 59654480 (+)
G909589 NA non-coding downstream 108462 59654997 ~ 59655280 (+)
ankrd49 LOC106602680 other upstream 1026576 58456982 ~ 58517975 (+)
LOC110534354 NA other upstream 1873095 57645943 ~ 57671502 (+)
LOC110534333 LOC106602771 other upstream 2339465 57142719 ~ 57206820 (+)
G909581 NA other downstream 78216 59624751 ~ 59638698 (+)
G911148 LOC106602559 other downstream 1195769 60742304 ~ 60755677 (+)
LOC110533174 LOC106602527 other downstream 1604729 61146124 ~ 61185835 (+)
G911611 LOC106609905 other downstream 2019822 61566357 ~ 61569062 (+)
si:dkey-9i23.4 LOC106596523 other downstream 2103222 61649733 ~ 61659500 (+)

Expression

LOC110534401 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

LOC110534401 Expression in each Bioproject

Bar chart with 21 bars.
LOC110534401 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network