LOC110534398 (LOC106602548)


Basic Information

Item Value
gene id LOC110534398
gene name LOC106602548
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 59554626 ~ 59557594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619249.2
CTAAACTGTATGCTCGTACTTCCTGAAATCGCTTACACACGTGGACTTCCGAACTCTGCTCACGTTGTCGCTTCTTACGGTCTGTAAATAACATATGTATTGATTATTTGTGGTCACATCGTCATATAATTTTGACAACATGTCGACAAGTGAGAAAATAACACCAAACGAAGGACTGAGCGCCGAAGAGGACGAGTTGCCTCCTCCCGTTGTGACTCGGACTCGTAGCGGGCGCAGAGTACGGACCCCAGCTGTGTATCTCGACTCCGAAGTACCGAAGACTCCAACACGCCGAACAAGGAAATCTGTCATTCAAGAGTTACCGAATGAGAACCAGGCGGAACCCGAACCAGAGGTTGTAGTCGTGGAACCAGTTGCCGACGAGACTCGTGCGAAAAAACTTCCAAGCAGTGAGTCCAAATCAAATGCATTGGCAACAGCTGAGGCATGTCCAAAACTGGTCAAGTCAGACACACCTGAAGGGAAATCATTAGGTGCCGTTATTCCAGCTGTGTCACATCATTGCAACGAGAAGGAAAACAAGGTTGGTCCCGTACCAATGGAGACTGTTCCGCACCGCCCAAATAAAACGGCCAAAAAGAGGACTCATTCAGAGTCAAATGAGAAACGTGACGTGATACCTTTGGGTAAACCGAAATCTGGACGGGTATGGAAAGACCGCAATAAGCAAAGGTTCTCGGCTCTTGTAAGAGATAAGCCACTGTGCACCTCCTGGGAGAAGAAGATGGTGGCCAAGCGAGAGAAGGAGCTGGTGAAGAAATATTCCCTGCAACTGAAGGAGGACAAGGCCAGGGAGAAAGAGGAAAAGAGGAAGAGGCATGAGGAGAATTTGAAAAGGCGAGCTGAGAacgagaggaagggggaggttgTGCAAGTGATCCGGAACACAACAAAGAtcaagaggatgaagaagaaacAGCTGAGGAAGATTGAGAAGAGGGACACACTTGCCATGCTGCAGAAATCACAGCCCAGGAACCCAAAAGCTGCACGGAAAGGGGACAAGTAGAGGGAGTGCACTTGGTTGACTGATGGAATGTTCAGATCTACAGCTCTGTTGAGAACCACCCCCTAGGCACTTCATGTAGATATGAGAGAACCAGTCAGAAAacgggcttgctccgtccgctccacgcatcgacccggtattgcagttcCTCCAGGATGAAGGCGTTCGATCTTTCCCTCAATAGGCTAGGTGGAATTTTCTCCATATTGCTTAATATATCCAATCCTTTTCAGATCTACACAGTGCCTAGGGGGTAGGGCCAACGCTGTGTGTGAGGCTGCTAGAACTGGAGAGCATGAGCAGCAAACCCTTTCAAAACAAGTAACCGTCTGGAGCATTGCAGATGTAAAAAGTGCCTCCTACCTCTATTTTGTGGAAATCCAAACATGGGCTGGAAGAATTCTTTACTTGACCTCTTACTAGATTTACTGTCGTGTAATGCAATGTTCCATTAAACAAAGCAAATTGTTATACCAGTGGGTCTCCCAACCTTTTTTTTCCTTAATGGTCCACTAGATCACCATTGCAAGCTTTTTGCCCACAAGTGTGTTGCATTAAAGGAATAATGACACTAAAGCAAGTGTGCACTTCTCCAGTCAGGCTTTATTACATCACCCTGTGATGCTGTTATACTCGGTGCCCTGACCAAGATCCATAAGAGAATGAATGAGCTTAAAAAGATGGGGAACTACAACAAATGGAGGGAAGATGAATGGAAAGACAGTGAAAGAACTCAAGACTATATGAACAATACAATGGACATTCAACTCAAGACAGGTCTAGTAAACTAGTTGTACAACACCTGACAATGGTTTTGatgcagatattttttttttcaactatTGTGGTGTCTTCACAGCAGTGTAACTGGATCAAATGTATTGTACAACGTGTGTGTACGGGGCCAGGGAGTAGGAGAAAAAAGTAATGAAACTAGTTACAATTAATGGAGGACAATCCAGTTCTAGGAGAAACAGTCATGTTCTATTTTACAGAAACAAATGGGAGTTCTCTCTGACCTTAAATACAAATCACCATACTTAGATCTAACTAATCAATATTATTAATAGCACTAATTATTACTTTGATATATACACAAATATTAGCAATGTTCTGTGTCGGTTTTTTCCTCGGTCTCAAAAACATTTTGTAAGTACACttgaaaataaaatgtgatttatct

Function

NR:

description
coiled-coil domain-containing protein 86-like

GO: NA

KEGG:

id description
K14822 CGR1; rRNA-processing protein CGR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619249.2 True 2213 mRNA 0.44 4 59554626 59557594
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Neighbor

gene id symbol gene type direction distance location
trnat-agu-3 NA coding upstream 4870 59549683 ~ 59549756 (+)
LOC110534401 NA coding upstream 8091 59544551 ~ 59546535 (+)
LOC110534399 LOC106602650 coding upstream 10177 59540280 ~ 59544449 (+)
LOC110534395 LOC106602650 coding upstream 31455 59512421 ~ 59523171 (+)
LOC110533170 LOC106602661 coding upstream 60350 59482542 ~ 59494276 (+)
LOC110534404 LOC106602550 coding downstream 84386 59641980 ~ 59648505 (+)
LOC110534405 LOC106602553 coding downstream 102016 59659610 ~ 59697075 (+)
LOC118937067 NA coding downstream 415510 59973104 ~ 59973159 (+)
LOC110534409 LOC106602556 coding downstream 678571 60236165 ~ 60334139 (+)
LOC110534410 LOC106602558 coding downstream 1120780 60678374 ~ 60741479 (+)
G909485 NA non-coding upstream 18201 59503760 ~ 59536425 (+)
G909469 NA non-coding upstream 25657 59526357 ~ 59528969 (+)
G909468 LOC106602664 non-coding upstream 49207 59466432 ~ 59505419 (+)
G909543 NA non-coding downstream 36862 59594456 ~ 59607256 (+)
G909578 NA non-coding downstream 61955 59619549 ~ 59620943 (+)
G909544 NA non-coding downstream 91509 59649103 ~ 59649878 (+)
G909588 NA non-coding downstream 96517 59654111 ~ 59654480 (+)
G909589 NA non-coding downstream 97403 59654997 ~ 59655280 (+)
LOC110534381 cldnd other upstream 145683 59401708 ~ 59408944 (+)
ankrd49 LOC106602680 other upstream 1036651 58456982 ~ 58517975 (+)
LOC110534354 NA other upstream 1883170 57645943 ~ 57671502 (+)
LOC110534333 LOC106602771 other upstream 2349540 57142719 ~ 57206820 (+)
G909581 NA other downstream 67157 59624751 ~ 59638698 (+)
G911148 LOC106602559 other downstream 1184710 60742304 ~ 60755677 (+)
LOC110533174 LOC106602527 other downstream 1593670 61146124 ~ 61185835 (+)
G911611 LOC106609905 other downstream 2008763 61566357 ~ 61569062 (+)
si:dkey-9i23.4 LOC106596523 other downstream 2092163 61649733 ~ 61659500 (+)

Expression

LOC110534398(LOC106602548) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC110534398(LOC106602548) Expression in each Bioproject

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LOC110534398(LOC106602548) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network