LOC110534419 (LOC106602564)


Basic Information

Item Value
gene id LOC110534419
gene name LOC106602564
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 60995178 ~ 61001444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619279.2
ACATTTGAGTCACAACGTTGTTGAGTCATCTACTAGGACATGAGTTGGATGACCCGGTTCTGTTTACACGCGGACCCCTTATCTGCAACAAAAAGGAGGACCTTGATCGGATAAATATACCATCAGGGGCCAGAGGCTCTTCATTCTCCAACTGGACAACACCACAACTGGTGTACCAAAGGCTAGTAACATGGCTCCTTCCCTTTTGTCCACAGCCGCAGGCGTTCTTTTgctgttctccctctcctccgcACAAACGAGGGGAGACTATTCCGAGGACTGCACACCAAGGGACGGATTTGGCAAGTACTGCCCGACGACATGTGGCGTGGCTGACTACCTCAACAGGTACAAGCCGGTGGTGGACAAGGACCTTGATGAAATGGAGGACATCCTGGGTAGAATAACCAACCTTACCACTGGGGCCACGGAGAAAGTCACCTACATGAAGGATTCGGCAACACAACATCAGAAGTCTGGTGGAGACGTCCACTACAAAAGGTCAGCGAGCATACTGGATGATGTCCTGCGCTTCGAGAAGACCATCGTCTCCCAGGAGGAGCAAATATATCAACTCCAGGGGATGCTGGAATCCAATAAGAAGAGGATGTTAGACCTCAAACAGATGTCCATTCAGCTGGATCAGAAATGCCAAGATCCCTGCAAGGACACCGTGGAAATCAAACCCATTACAGGGAAAGATTGCCAGGATATTGCCAACAAGGGGGCCAAAAGCAGCGGTCTGTACTACGTGAAGCCACTGAAGGCTAAGGAGCAGTTCCTGGTCTACTGCGAGATCGACAGCTTCGGCCGCGGCTTTACCGTCCTGCAGCGGAGACGTGATGGCAACGTGGACTTCAACAAGGACTGGATCCAGTATAAGGAGGGCTTCGGCTACCTGAGCCCAGATGACACCACCGAGTTCTGGCTGGGCAATGAGAAGATGCACCTGCTTTCCACCCAGTCCTCCATCCCATACGTGTTGAGGATCGAGCTCACCGACTGGCAGGGCAACAAGAAGCATGCCGACTACGCCATGTTCAAAGTGGGTCCGGAAGTCGACATGTACCGTCTGACCTACGCTTACTACTTCGGCGGTGACGCGGGTGACGCGTTTGACGGCTTTGACTTCGGCGATGACCCCAGCGACAAGTTCTACACGTCTCACAACGGCATGCAGTTTAGTACCAGCGACAAGGACAACGACAAGTTCCAGGGCAACTGTGCTAAGCAGGACGGCTCCGGTTGGTGGATGAACCGATGCCACGCCGCCCACCTCAACGGGAAATACTACCCggGTGGGAAGTACACGGAGAAGGACGCCGGCGAGTCAGGCTACGACAATGGCATCATCTGGGCCACGTGGCACAGCCGCTGGTACTCCTTGAAGGAGACTACCATGAAGATCATCCCCACCAACAGGATCACGGCGGGGGACGGACAGCAGACCGGAGGGGTCAAACAGTTTGGAGGCCTGGGAGACAACTAAAACACATACTGTGTCCTGAGAAAGTTCAAGGAAGCTCGAACTTCCTTGAATTTTGCCGGGCACAGATTAAGCCAAGTCCTAAAACGCACATGGAGAATCTCTATTAAACATGTAGTCCAGGACTAACTTTAGGCctaatctgtgtctggggaaaAGGCCCTCTGTCTTGTAACTTCTTTTTATTGGTTCGATCAATTTAGTTTTTTTGCCCTCTTGCCTAAAATATTGTCTATGATCAAATCGCTGTTGTTGGACCTTGGAAGATTGGTTCAACTTCTTCTATTTAGCACCATCTTAGAACAAACTTGATCTACTGTCTATGGAGAATAATTAGATCTGGTTGGTTTAACCAGTGAATAAATGTTGTATTTGTCTACATGTAAGATGTATTTTGTGCTGGTTTTAGATACCCCTGCAACGACTACATGATCTAAGACAGGGTTTGAACCTGGGTGGTCTGAAAGCCATAAGACTGTGTAAGCCCTCTAAGCTAAAAGCCAATACCTCAGGGAGATAACACacgtcttcaggtctcaggccaAGGTGCCGAATCACCTCAAATAGCATTTAAAAAGACCATGCCAATTTCTTTATTGTACTTTCCCTGATATCCATTCCTGGTACCACTTGTAATTGTTCTAAATGTGATAAATGATACCCACATTTATATGATATACATTTCATTTAGAAATCGAACAAGCAGTATATGATGAATTGCACATAGGCATCGGATGATAAATGAAATAACCATGGAAGTTGGTGGCGGCATTGAAAGGATTTTAAATAGAAGGCTCTGTGCTGGGAGGACCAAACTCAATCAATTCGTTCAACGATTTTTAGAAGCTATTCTGATTCACTGCTATTTTGAAGTTCTTGGAAATCATCTATTGGAAGTTCTTTGAACCAATATTCAAATGGCCTGGTTTGAATTCTGAGAGGATGTGTCAACGGGGAAACAAACTGACGCTATTAGGTAGGAATGTTAAGTAGGAATTGACCGTATTAAAGAGGGTATGTGTGTTTTGCCCACCAAAtccagggtcatgttcagtatGGACAAAACGTTCTGAGACAGAGTGAAACTATTACAAATCCTGTTATGTCCTTTATGCTGTTCTATTACAAAATAAATACCTACCTGAACATA

Function

NR:

description
fibrinogen gamma chain-like

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0051258 protein polymerization biological_process
GO:0007165 signal transduction biological_process
GO:0005577 fibrinogen complex cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K03905 FGG; fibrinogen gamma chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619279.2 True 2636 mRNA 0.47 9 60995178 61001444
Loading

Neighbor

gene id symbol gene type direction distance location
si:dkey-256e7.8 LOC106602637 coding upstream 63661 60927726 ~ 60931517 (+)
LOC110534414 alp coding upstream 68158 60914343 ~ 60927020 (+)
sorbs2a LOC106602561 coding upstream 82359 60807149 ~ 60912819 (+)
LOC110534410 LOC106602558 coding upstream 253699 60678374 ~ 60741479 (+)
LOC110534409 LOC106602556 coding upstream 661039 60236165 ~ 60334139 (+)
LOC110534418 LOC106602566 coding downstream 2792 61004236 ~ 61032099 (+)
LOC110534417 LOC106602568 coding downstream 16883 61018327 ~ 61021531 (+)
LOC118936723 LOC106602568 coding downstream 42344 61043788 ~ 61046242 (+)
LOC110534423 LOC106602568 coding downstream 52141 61053585 ~ 61077574 (+)
LOC110534427 LOC106592462 coding downstream 78317 61079761 ~ 61084182 (+)
G911293 NA non-coding upstream 18873 60976101 ~ 60976305 (+)
G911290 NA non-coding upstream 21449 60973507 ~ 60973729 (+)
G911289 NA non-coding upstream 21976 60972980 ~ 60973202 (+)
G911288 NA non-coding upstream 22290 60972625 ~ 60972888 (+)
G911244 NA non-coding upstream 73176 60864321 ~ 60922002 (+)
G911307 NA non-coding downstream 33370 61034814 ~ 61035396 (+)
G911310 NA non-coding downstream 56835 61058279 ~ 61058527 (+)
G911317 NA non-coding downstream 65774 61067218 ~ 61067451 (+)
G911318 NA non-coding downstream 66206 61067650 ~ 61067969 (+)
G911320 NA non-coding downstream 68730 61070174 ~ 61070505 (+)
G911148 LOC106602559 other upstream 250565 60742304 ~ 60755677 (+)
G909581 NA other upstream 1356480 59624751 ~ 59638698 (+)
LOC110534399 LOC106602650 other upstream 1451598 59540280 ~ 59544449 (+)
LOC110534381 cldnd other upstream 1586235 59401708 ~ 59408944 (+)
ankrd49 LOC106602680 other upstream 2477203 58456982 ~ 58517975 (+)
LOC110533174 LOC106602527 other downstream 149820 61146124 ~ 61185835 (+)
G911611 LOC106609905 other downstream 564913 61566357 ~ 61569062 (+)
si:dkey-9i23.4 LOC106596523 other downstream 648313 61649733 ~ 61659500 (+)
G911652 NA other downstream 655883 61657327 ~ 61658426 (+)
G911667 NA other downstream 689825 61691269 ~ 61691638 (+)

Expression

LOC110534419(LOC106602564) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12500.
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LOC110534419(LOC106602564) Expression in each Bioproject

Bar chart with 19 bars.
LOC110534419(LOC106602564) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300000.
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Co-expression Network