Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110534427 |
| gene name | LOC106592462 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 61079761 ~ 61084182 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| E3 ubiquitin-protein ligase TRIM39-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021619285.2 | True | 4024 | mRNA | 0.42 | 2 | 61079761 | 61084182 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110534423 | LOC106602568 | coding | upstream | 2187 | 61053585 ~ 61077574 (+) |
| LOC118936723 | LOC106602568 | coding | upstream | 33519 | 61043788 ~ 61046242 (+) |
| LOC110534418 | LOC106602566 | coding | upstream | 47662 | 61004236 ~ 61032099 (+) |
| LOC110534417 | LOC106602568 | coding | upstream | 58230 | 61018327 ~ 61021531 (+) |
| LOC110534419 | LOC106602564 | coding | upstream | 78317 | 60995178 ~ 61001444 (+) |
| LOC110534426 | LOC106592462 | coding | downstream | 8372 | 61092554 ~ 61095188 (+) |
| LOC110534424 | LOC106592462 | coding | downstream | 27647 | 61111829 ~ 61115058 (+) |
| LOC110533174 | LOC106602527 | coding | downstream | 61942 | 61146124 ~ 61185835 (+) |
| ssrp1b | LOC106602577 | coding | downstream | 493171 | 61577353 ~ 61599395 (+) |
| LOC110534941 | LOC106602642 | coding | downstream | 523699 | 61607881 ~ 61618461 (+) |
| G911324 | NA | non-coding | upstream | 6746 | 61072631 ~ 61073015 (+) |
| G911322 | NA | non-coding | upstream | 8019 | 61071511 ~ 61071742 (+) |
| G911320 | NA | non-coding | upstream | 9256 | 61070174 ~ 61070505 (+) |
| G911318 | NA | non-coding | upstream | 11792 | 61067650 ~ 61067969 (+) |
| G911317 | NA | non-coding | upstream | 12310 | 61067218 ~ 61067451 (+) |
| G911338 | NA | non-coding | downstream | 33742 | 61117924 ~ 61118196 (+) |
| G911392 | NA | non-coding | downstream | 120061 | 61204243 ~ 61204506 (+) |
| G911399 | NA | non-coding | downstream | 130774 | 61214956 ~ 61215222 (+) |
| G911404 | NA | non-coding | downstream | 137301 | 61221483 ~ 61221684 (+) |
| G911148 | LOC106602559 | other | upstream | 335148 | 60742304 ~ 60755677 (+) |
| G909581 | NA | other | upstream | 1441063 | 59624751 ~ 59638698 (+) |
| LOC110534399 | LOC106602650 | other | upstream | 1536181 | 59540280 ~ 59544449 (+) |
| LOC110534381 | cldnd | other | upstream | 1670818 | 59401708 ~ 59408944 (+) |
| ankrd49 | LOC106602680 | other | upstream | 2561786 | 58456982 ~ 58517975 (+) |
| G911611 | LOC106609905 | other | downstream | 482175 | 61566357 ~ 61569062 (+) |
| si:dkey-9i23.4 | LOC106596523 | other | downstream | 565575 | 61649733 ~ 61659500 (+) |
| G911652 | NA | other | downstream | 573145 | 61657327 ~ 61658426 (+) |
| G911667 | NA | other | downstream | 607087 | 61691269 ~ 61691638 (+) |
