Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110533174 |
| gene name | LOC106602527 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 61146124 ~ 61185835 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| palmitoyltransferase ZDHHC5-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036933551.1 | False | 7340 | mRNA | 0.51 | 12 | 61146124 | 61185835 |
| XR_005034198.1 | False | 5584 | mRNA | 0.54 | 12 | 61151173 | 61183631 |
| XM_036933550.1 | False | 7683 | mRNA | 0.50 | 12 | 61151175 | 61185835 |
| TU1036457 | False | 4304 | TUCP | 0.51 | 11 | 61151264 | 61181665 |
| TU1036458 | False | 4305 | TUCP | 0.51 | 11 | 61151264 | 61181665 |
| TU1036460 | False | 522 | TUCP | 0.66 | 1 | 61181749 | 61182270 |
| TU1036461 | False | 460 | TUCP | 0.65 | 1 | 61181749 | 61182208 |
| TU1036453 | False | 2470 | lncRNA | 0.43 | 2 | 61182482 | 61185831 |
| TU1036455 | True | 2573 | lncRNA | 0.44 | 2 | 61182482 | 61185831 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110534424 | LOC106592462 | coding | upstream | 31066 | 61111829 ~ 61115058 (+) |
| LOC110534426 | LOC106592462 | coding | upstream | 50936 | 61092554 ~ 61095188 (+) |
| LOC110534427 | LOC106592462 | coding | upstream | 61942 | 61079761 ~ 61084182 (+) |
| LOC110534423 | LOC106602568 | coding | upstream | 68550 | 61053585 ~ 61077574 (+) |
| LOC118936723 | LOC106602568 | coding | upstream | 99882 | 61043788 ~ 61046242 (+) |
| ssrp1b | LOC106602577 | coding | downstream | 391518 | 61577353 ~ 61599395 (+) |
| LOC110534941 | LOC106602642 | coding | downstream | 422046 | 61607881 ~ 61618461 (+) |
| si:dkey-9i23.4 | LOC106596523 | coding | downstream | 463898 | 61649733 ~ 61659500 (+) |
| tmem187 | tm187 | coding | downstream | 507508 | 61693343 ~ 61694713 (+) |
| ndufs8a | LOC106602580 | coding | downstream | 511739 | 61697574 ~ 61705213 (+) |
| G911338 | NA | non-coding | upstream | 27928 | 61117924 ~ 61118196 (+) |
| G911324 | NA | non-coding | upstream | 73109 | 61072631 ~ 61073015 (+) |
| G911322 | NA | non-coding | upstream | 74382 | 61071511 ~ 61071742 (+) |
| G911320 | NA | non-coding | upstream | 75619 | 61070174 ~ 61070505 (+) |
| G911318 | NA | non-coding | upstream | 78155 | 61067650 ~ 61067969 (+) |
| G911392 | NA | non-coding | downstream | 18408 | 61204243 ~ 61204506 (+) |
| G911399 | NA | non-coding | downstream | 29121 | 61214956 ~ 61215222 (+) |
| G911404 | NA | non-coding | downstream | 35648 | 61221483 ~ 61221684 (+) |
| G911409 | LOC100194703 | non-coding | downstream | 46455 | 61232290 ~ 61232656 (+) |
| G911531 | NA | non-coding | downstream | 232086 | 61417921 ~ 61421148 (+) |
| G911148 | LOC106602559 | other | upstream | 401511 | 60742304 ~ 60755677 (+) |
| G909581 | NA | other | upstream | 1507426 | 59624751 ~ 59638698 (+) |
| LOC110534399 | LOC106602650 | other | upstream | 1602544 | 59540280 ~ 59544449 (+) |
| LOC110534381 | cldnd | other | upstream | 1737181 | 59401708 ~ 59408944 (+) |
| ankrd49 | LOC106602680 | other | upstream | 2628149 | 58456982 ~ 58517975 (+) |
| G911611 | LOC106609905 | other | downstream | 380522 | 61566357 ~ 61569062 (+) |
| G911652 | NA | other | downstream | 471492 | 61657327 ~ 61658426 (+) |
| G911667 | NA | other | downstream | 505434 | 61691269 ~ 61691638 (+) |
| G912025 | LOC106602626 | other | downstream | 1052142 | 62237977 ~ 62335475 (+) |
| LOC110533174 | LOC106602527 | other | upstream | 212 | 61146124 ~ 61185835 (+) |
