si:dkey-9i23.4 (LOC106596523)


Basic Information

Item Value
gene id si:dkey-9i23.4
gene name LOC106596523
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 61649733 ~ 61659500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619293.2
TAGAGGGGTGGGCATCTGTATCTGTAAGGACGGGGTGAGaattacagggaggaggtgagattaCATTTGCTATTAAAAGAAGGGAATaccaaatgagagagagagagagagagagcgggagagagagagagggagaagcaacCTAGTCCACACTCTGAATCAGAGGAAGCCAAGATGAAGTTTGTCAGCCTGATTGTGATGATGTCACTACTTGGGACAAAAATGGCTTTGACATTCCACAGAAGTACCGGTGGGGATGAAGCTCCAGTGTATCTCCAGGAGGAGACCGCAGAGTGTGACATGCCCAAAGCCTGTGACCTGAAGAATTATGAAGACTGGTACAGGCTGGGCTCCTACTGCATCAAGTACTTCAAGGCTGCCCTCAACTTCACCGAAGCGGAGACACAGTGCAGGTCTGCTGCCCCCGGTGGCCACCTGGTGTCGGTGCATAACTGTCAAGCCAACGACAACCTGCTTTGCGTGGTGATGAAGAACAACGCCAAAAACCCTCGCATCTGGCTGGGAGGCTTCGAACTCTTCCAGTCTGGTAAGTTTGTGTGGACTGACGGCTCCAGCTGGAACTTTGAAGCATGGACCCCTGGGGAGCCCATCTCCCGCTGGGGGAGCCGCGAGGACTGTGTGGAGATGAACTGGAGCGAAATTGGGAAATGGAACGACCACACGTGTTTCACCAAGAAGAGCTACGTGTGCTCCTTCAAGAACAGAGTTTGAGGACAAATATCCACGCTCACATACTTAGTATGAAGCAGCAATGTATTGGGCATGCTTTCTCCAGTGGTGTGTTGGTatagactgtgtgtctgtctgtgtaacaCCAACCcagtcccctgctcctctctcttggGTTGTGACcgaaatgacaccctgttccctatagagtgcaccacttttgaccagagccccacgggccccctggtcaaagtagtgcactataaaggatagggtgtcattttggactCCTCCTGCTCCTTTCCCCAATGACCCCAACCCACAGATCTCCCACGGTGAAACCAAACCACATAGAGATGTGCCTGCTTTTAGCAAACTGAAAAatgcattaaaaaatatatataaataaagagTGTTAAGCAAGT
>XM_021619292.2
GGTGGGCATCTGTATCTGTAAGGACGGGGTGAGaattacagggaggaggtgagattaCATTTGCTATTAAAAGAAGGGAATaccaaatgagagagagagagagagagagcgggagagagagagagggagaagcaacCTAGTCCACACTCTGGAAACGCAGAATCAGAGGAAGCCAAGATGAAGTTTGTCAGCCTGATTGTGATGATGTCACTACTTGGGACAAAAATGGCTTTGACATTCCACAGAAGTACCGGTGGGGATGAAGCTCCAGTGTATCTCCAGGAGGAGACCGCAGAGTGTGACATGCCCAAAGCCTGTGACCTGAAGAATTATGAAGACTGGTACAGGCTGGGCTCCTACTGCATCAAGTACTTCAAGGCTGCCCTCAACTTCACCGAAGCGGAGACACAGTGCAGGTCTGCTGCCCCCGGTGGCCACCTGGTGTCGGTGCATAACTGTCAAGCCAACGACAACCTGCTTTGCGTGGTGATGAAGAACAACGCCAAAAACCCTCGCATCTGGCTGGGAGGCTTCGAACTCTTCCAGTCTGGTAAGTTTGTGTGGACTGACGGCTCCAGCTGGAACTTTGAAGCATGGACCCCTGGGGAGCCCATCTCCCGCTGGGGGAGCCGCGAGGACTGTGTGGAGATGAACTGGAGCGAAATTGGGAAATGGAACGACCACACGTGTTTCACCAAGAAGAGCTACGTGTGCTCCTTCAAGAACAGAGTTTGAGGACAAATATCCACGCTCACATACTTAGTATGAAGCAGCAATGTATTGGGCATGCTTTCTCCAGTGGTGTGTTGGTatagactgtgtgtctgtctgtgtaacaCCAACCcagtcccctgctcctctctcttggGTTGTGACcgaaatgacaccctgttccctatagagtgcaccacttttgaccagagccccacgggccccctggtcaaagtagtgcactataaaggatagggtgtcattttggactCCTCCTGCTCCTTTCCCCAATGACCCCAACCCACAGATCTCCCACGGTGAAACCAAACCACATAGAGATGTGCCTGCTTTTAGCAAACTGAAAAatgcattaaaaaatatatataaataaagagTGTTAAGCAAGT
>TU1036737
TAAGGACGGGGTGAGaattacagggaggaggtgagattaCATTTGCTATTAAAAGAAGGGAATaccaaatgagagagagagagagagagagcgggagagagagagagggagaagcaacCTAGTCCACACTCTGAATCAGAGGAAGCCAAGATGAAGTTTGTCAGCCTGATTGTGATGATGTCACTACTTGGGACAAAAATGGCTTTGACATTCCACAGAAGTACCGACACAGTGCAGGTCTGCTGCCCCCGGTGGCCACCTGGTGTCGGTGCATAACTGTCAAGCCAACGACAACCTGCTTTGCGTGGTGATGAAGAACAACGCCAAAAACCCTCGCATCTGGCTGGGAGGCTTCGAACTCTTCCAGTCTGGTAAGTTTGTGTGGACTGACGGCTCCAGCTGGAACTTTGAAGCATGGACCCCTGGGGAGCCCATCTCCCGCTGGGGGAGCCGCGAGGACTGTGTGGAGATGAACTGGAGCGAAATTGGGAAATGGAACGACCACACGTGTTTCACCAAGAAGAGCTACGTGTGCTCCTTCAAGAACAGAGTTTGAGGACAAATATCCACGCTCACATACTTAGTATGAAGCAGCAATGTATTGGGCATGCTTTCTCCAGTGGTGTGTTGGTatagactgtgtgtctgtctgtgtaacaCCAACCcagtcccctgctcctctctcttggGTTgtgtcattttggactCCTCCTGCTCCTTTCCCCAATGACCCCAACCCACAGATCTCCCACGGTGAAACCAAACCACATAGAGATGTGCCTGCTTTTAGCAAACTGAAAAatgcattaaaaaatatatataaataaagagTGTTAAGCAAGTAAACAAC

Function

NR:

description
lectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619293.2 False 1115 mRNA 0.50 6 61649733 61659493
XM_021619292.2 False 1118 mRNA 0.50 6 61649739 61659493
TU1036737 True 850 TUCP 0.49 6 61649757 61659500
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534941 LOC106602642 coding upstream 31272 61607881 ~ 61618461 (+)
ssrp1b LOC106602577 coding upstream 50338 61577353 ~ 61599395 (+)
LOC110533174 LOC106602527 coding upstream 463898 61146124 ~ 61185835 (+)
LOC110534424 LOC106592462 coding upstream 534675 61111829 ~ 61115058 (+)
LOC110534426 LOC106592462 coding upstream 554545 61092554 ~ 61095188 (+)
tmem187 tm187 coding downstream 33850 61693343 ~ 61694713 (+)
ndufs8a LOC106602580 coding downstream 38081 61697574 ~ 61705213 (+)
LOC110534943 NA coding downstream 51616 61711109 ~ 61712946 (+)
LOC110534440 LOC105022884 coding downstream 65672 61725165 ~ 61736061 (+)
LOC110534442 LOC106602583 coding downstream 78839 61738332 ~ 61746064 (+)
G911642 NA non-coding upstream 23454 61626072 ~ 61626279 (+)
G911640 LOC106602581 non-coding upstream 23891 61618538 ~ 61625842 (+)
G911617 NA non-coding upstream 75715 61573647 ~ 61574018 (+)
G911618 NA non-coding upstream 76798 61572559 ~ 61572935 (+)
G911616 NA non-coding upstream 77218 61572137 ~ 61572515 (+)
G911655 NA non-coding downstream 7914 61667407 ~ 61675887 (+)
G911656 NA non-coding downstream 9681 61669174 ~ 61670097 (+)
G911658 LOC106602578 non-coding downstream 17619 61677112 ~ 61677520 (+)
G911659 LOC106602578 non-coding downstream 18561 61678054 ~ 61678486 (+)
G911660 NA non-coding downstream 20004 61679497 ~ 61679729 (+)
G911611 LOC106609905 other upstream 80671 61566357 ~ 61569062 (+)
G911148 LOC106602559 other upstream 905120 60742304 ~ 60755677 (+)
G909581 NA other upstream 2011035 59624751 ~ 59638698 (+)
LOC110534399 LOC106602650 other upstream 2106153 59540280 ~ 59544449 (+)
G911667 NA other downstream 31776 61691269 ~ 61691638 (+)
G912025 LOC106602626 other downstream 578484 62237977 ~ 62335475 (+)
LOC110534674 LOC106602611 other downstream 786117 62445576 ~ 62449042 (+)
LOC110534616 LOC106610074 other downstream 876963 62398688 ~ 63503034 (+)
G911920 zn271 other downstream 881307 62540800 ~ 62591739 (+)

Expression

si:dkey-9i23.4(LOC106596523) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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si:dkey-9i23.4(LOC106596523) Expression in each Bioproject

Bar chart with 19 bars.
si:dkey-9i23.4(LOC106596523) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network