Gene
RNA
| Item | Value |
|---|---|
| gene id | kdm2aa |
| gene name | LOC106602582 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 61746177 ~ 61768303 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| lysine-specific demethylase 2A-like isoform X6 |
| id | description |
|---|---|
| K10276 | FBXL10_11, KDM2; F-box and leucine-rich repeat protein 10/11 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005034199.1 | False | 3868 | mRNA | 0.59 | 20 | 61746177 | 61766132 |
| XM_021619305.2 | False | 5667 | mRNA | 0.56 | 21 | 61746182 | 61768303 |
| XM_036933570.1 | False | 6833 | mRNA | 0.53 | 21 | 61746419 | 61768303 |
| XM_036933573.1 | False | 5510 | mRNA | 0.56 | 21 | 61749068 | 61768303 |
| XM_036933571.1 | False | 5515 | mRNA | 0.56 | 21 | 61749702 | 61768303 |
| XM_036933572.1 | True | 6353 | mRNA | 0.56 | 21 | 61749778 | 61768303 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110534442 | LOC106602583 | coding | upstream | 113 | 61738332 ~ 61746064 (+) |
| LOC110534440 | LOC105022884 | coding | upstream | 10116 | 61725165 ~ 61736061 (+) |
| LOC110534943 | NA | coding | upstream | 33231 | 61711109 ~ 61712946 (+) |
| ndufs8a | LOC106602580 | coding | upstream | 40964 | 61697574 ~ 61705213 (+) |
| tmem187 | tm187 | coding | upstream | 51464 | 61693343 ~ 61694713 (+) |
| LOC110534449 | LOC106602587 | coding | downstream | 53448 | 61821751 ~ 61834621 (+) |
| LOC110534447 | LOC106602588 | coding | downstream | 66721 | 61835024 ~ 61844735 (+) |
| LOC110534451 | LOC106602649 | coding | downstream | 79851 | 61848154 ~ 61853306 (+) |
| tmem132a | LOC106602589 | coding | downstream | 92153 | 61860456 ~ 61868200 (+) |
| LOC118936725 | LOC106602589 | coding | downstream | 101350 | 61869653 ~ 61876999 (+) |
| G911711 | NA | non-coding | upstream | 8187 | 61737761 ~ 61737990 (+) |
| G911709 | NA | non-coding | upstream | 9402 | 61736575 ~ 61736775 (+) |
| G911680 | LOC106581475 | non-coding | upstream | 35335 | 61710541 ~ 61710842 (+) |
| G911677 | NA | non-coding | upstream | 36974 | 61708987 ~ 61709203 (+) |
| G911716 | NA | non-coding | downstream | 772 | 61769075 ~ 61769315 (+) |
| G911720 | NA | non-coding | downstream | 6012 | 61774315 ~ 61774636 (+) |
| G911722 | NA | non-coding | downstream | 10619 | 61778922 ~ 61779139 (+) |
| G911726 | LOC106602585 | non-coding | downstream | 21075 | 61789378 ~ 61790570 (+) |
| G911728 | NA | non-coding | downstream | 27744 | 61796047 ~ 61796252 (+) |
| G911667 | NA | other | upstream | 54539 | 61691269 ~ 61691638 (+) |
| si:dkey-9i23.4 | LOC106596523 | other | upstream | 86677 | 61649733 ~ 61659500 (+) |
| G911652 | NA | other | upstream | 87751 | 61657327 ~ 61658426 (+) |
| G911611 | LOC106609905 | other | upstream | 177115 | 61566357 ~ 61569062 (+) |
| LOC110533174 | LOC106602527 | other | upstream | 563907 | 61146124 ~ 61185835 (+) |
| G912025 | LOC106602626 | other | downstream | 469674 | 62237977 ~ 62335475 (+) |
| LOC110534674 | LOC106602611 | other | downstream | 677307 | 62445576 ~ 62449042 (+) |
| LOC110534616 | LOC106610074 | other | downstream | 768153 | 62398688 ~ 63503034 (+) |
| G911920 | zn271 | other | downstream | 772497 | 62540800 ~ 62591739 (+) |
| LOC110534617 | LOC106602493 | other | downstream | 935656 | 62703911 ~ 62726488 (+) |
