LOC110534454 (LOC106602593)


Basic Information

Item Value
gene id LOC110534454
gene name LOC106602593
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 61890479 ~ 61909268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933583.1
TGCCCCAGACCCTGGAGAACATCAGGGGCCCGTCGGTTGTTGTGTTTAGAGGACTATGCTCTCCGCGACACCGTAAGGCAAGCGCTCGTGCTAAACCAGCCAGAGCCAGAGCAGCCTCACAGCCAGCCTGAGCCTCAGCCTCCACCGATGCAACAGCGATGGAACTGATGCTCCCAGGTGCTGACATGGGGTCCCAGAAGGACTCCTTCCCCCTGAGCAGAAGGCATCACTACCTCCACGTCCGGAGAAAACTGAGGCCCATAAGGATTCTAGCTTTCGTCCTCAGCATCGTGACCCTCAGCACGGTCTTCTCATTGGGTGCCTTCCAGTGGACTACTTCTTCTACTGGGCGTGATGGAAATGGAGGGGATCTACTTTCCTCCTCCCCCGCTGCTTTGTCCGGGGGAGACCTACTGCAGTCGGCCCCCCGCAGAACTCTGCTCACCACCAAGGACCAGGGAGGCCACAACGTCTCCATGATGGAGGACATGCCCGTGGCCATGAAGTCTTCCATGGACGAGGTGAACCAGGGGGACTACCCCACGGATCTCTTCAACCTGGAGGAGAGAAGGCAGGGGGCCGTCTGTCTGCACATGTTCGGGATGTTGTACATGTTCATCGCCTTAGCCATTGTGTGCGACGAGTTCTTTGTCCCGGCCCTGACTGTGATCACGGAGAAACTACAGATCTCGGACGACGTTGCCGGGGCAACCTTCATGGCGGCCGGGGGTTCTGCCCCGGAACTCTTCACCTCCGTCATCGGGGTGTTCGTCTCCCACAGCAACGTGGGCATAGGAACCATTGTGGGTTCGGCCGTGTTCAACATCCTGTTTGTCATCGGGATGTGCGCCCTGTTCTCCAGGGAGATTCTCCAGTTGACCTGGTGGCCCCTCTTTAGAGACGTCTCCTTCTACATCATTGGTCTGTTGATGCTCATCCTGTTCTTTTTGGATAACCAGATCTTTCTGTGGGAAAGTATCGCCTTGCTGATGTGCTACTTGAGTTATGTGACCTTTATGAAGTTCAACGCAGATGTAGAGACCTTCATAAAGAGTCAATTGGGCCAGAATCAAGTGGAAGAGGTGGAGGCCGCTCCTAAGGTGGCAAGCACGGGGGACGTCGAAAACAAGCTGACGGCCAAGCCCCGTCTCCAGAGAGGAGGATCATCAGCCTCCCTCCACAACTCCCTGATGAGGAATAGCATCTTCCAGCTCATGATCCACACCCTGGACCCCCTCAGTGAGGGGCGATTCAAAGAGAAGGCATCCATTCTTCACAAGATGGCCAAACAGAAATGTCAAGGAGGTGGGGACGGGGAAAAACCCAACGGTGTCGCAGACAAAAGCATCCCCAACAGTTCCAACGTGACAGTGGAAGTCACTTCGCCTGCGAACGGCGACATAGGACCGGTAGGCTTTgaggaggaggaggaagatgaggacgCTCCTCTGAGTTTGGAGTGGCCGGAGACGAACCGCAAACGAATAACGTATCTCCTTATCCTCCCCATCGTCTTCCCCCTGTGGCTCTCTCTGCCGGATGTCAGGAGAGAGacTTCCACAAAGTTCTTCCCCATAACCTTCATTGGTTCAATCTGTTGGATTGCTGCCTTCTCCTACCTCATGGTATGGTGGGCTCATCAGGTTGGAGAGACCTTCTGGATTACAGAGGAGATCATGGGATTGACCATATTAGCAGCTGGTACCTCAATCCCTGATCTAATCACCAGTGTCATTGTAGCCCGGAAAGGCCTTGGTGACATGGCTGTGTCCAGCTCTGTGGGCTCCAACATATTTGACATCACCGTGGGCCTGCCGTTCCCGTGGCTCGTCTACGGCCTAATCAATGACTTCAAGGCGGTGCAGGTGAGCAGCAACGGTCTGTTCTGCGCCATCGTGCTCCTCTTCCTCATGTTGCTCTTCGTCATCATCTCCATCGCTTCCTGCAAGTGGAAGATGAGCAAGGTGCTGGGAGGCCTCATGTTTTTACTGTACATCTTCTTCCTGGTAACCAGCGTCATGCTGGAAGACAAGATCATCGTGTGTCCCATCTCCATCTGAAAAGCCCCTCTTCAACCCCGAACCCCCTggaaacacaaagacacacaatCATATAATCCTCCAGTTGTCAATGGGGGCTTCCGTTGTGAGGAGCAGTAGAAAAAACGAGCCTGGCGTGATTGATTGATTTCAAATGTCCGAGCACAACCTGCAGATGATAATTTGCGAACTTATTGTGCAGGGCAGACGGACCTGACGATGAGCGATTGATTTCACGATGCTACGGCCCAACGGGGTGGGTCTCTCTCCACGTCACATGACCACATCGAGAGCTTCGGTTGGTTTGAATCCGTCGTTGGCTGACAAACAGGCAATTGTAATCACGCCTATGATGGAGAGTAGGACCACGTCTGGTTACTCCAATCCAGAGGACTATGTGATATGATTAGAGAATATATTTGAATTAGTCAGGTATCAACTGGTACCGACTGTCAGTCGGGCTCAAAAACCTTGATGACTGTATGAAGTGGAACTCTGGAAAAGGTCCAGCATTGTCCTAACCAGAAAGTGGAACCTGCCAGAGAAGTGTGGGAAGGTTGCACTGATCAAGCGGAAgtgtttttcttgatttttgtaAATTAGTTTTCAGATGTATTTATATTACAAATGATTCATTGCAAAACCCAAAAGGTTTTTGTTCTCAAATCAAAATCTAAAACTTGTACAGTTCTGATTTTGGTTTATAACTGGTACATGGTTGTATGAACTTGCAAAGTTTGGAAAGGTAAAAGTGTATATGAAGAGAAAATGATATTAATATGAAGACGGTGGTTTTGTTTGGGACAATTTTGTTAAGTAAATATAATATAGTATTTCTAATGTTAATTTATCTTCTGTTTCGTAACCCCAACCCATATTTTCCAACTTGTTTGACACTTAATATTAAGGTGATTCCAGTTGAGCAAATCTACTGTACCTAATGCTacaacatttttatgtttgaaaaagTTTTGGTAAAGTTTCGGTAAAGTTTCGGTAAAAGTACTTCCACTTATTCTATATGCAAATCAGTTGTGGAACATGACAAATGTCAATAGCTAAAATGGTCGACAGATGTGAAATTCAGCACACCGTATGATGTAGGCACATATTAAACCCCTTTCGGTGTACAACAACCCCTTTCaagcaaatgtatttataaagcccctttttacatcagcagatgtcacaaagtgctgtacagaaacccagactaaaaccccaaacagtgcagatgtagaagcagaTGTGAAGTGTAAAAACATCTAAAGTGGGGGTTGTGAACTCTGTACAAATGATCATTTTTTTCCATGTTTGATACAGTTTGTGTGCTTCAGAATCATATAGGCaacatctaaatatatacatttttcgaCGTTATTTGTTTGCTTGTTTTCTCGGTATAATACAGCAAACAGTAACATGTATATCTGAATAACATCCTGTGTTTTTCTTCTTCACTTGTGATCAACTGAACAGAATAGGGGTTGAAGATTTTATATTGACCAAAGCAAAATAGCATGTGAATGATATTATCCGGATAATCAATAGTTCTTCTctgtaaaaaaaatctatatgttTCTTCTCCACTATAAGATCGATCATAAAAAAATGTCAAACTATTTAGTTGCTGCAGAATTGTTACTTTACCATTGCAGTACGGTGCTTACACTTTCACTGGCAATCGCAAAGCATATCACTGGGATATACTATATGTGATTTTTTTAACAATAATAATTGAACCATCCCACACTGAATAGGCCAAATAAATAGGCTGCTATATTCACAACTTAAAATAGTGGATTATCTTTGTTAAAAGATTTTCCATGTATTACTGTATCCCCCTTCACTTTGTTGGTTAATTTCTCTAAGCCAATTTCCTCATTGTCAATTTGTTTTCTCTCATGTATGCAATTTGTATGCATACAAACAGTTTGTGAGCTGTAATGTCAACTCACAATATGATCATTCCATCTTATAGTCAGACCAATATTGCTTCCACTACTTTAGGGATCAATGTGGATCTCTACAGAACACTGTTAGATGGCAGATAACATCTTAACTTTAGACAGCCACATTAAAGGGAAGCACTTTCATATCTAGTGTGCAATTTGTTGATATCCTTTTTCAATGGATCTTATGCGTGTGTAACATTTTAATGTATAGATGAGCAGGAAGGAAAATCTGTCAATATGCAGAACTATATGGATGGCGTGGAAGTCTATCACAATACAGAACAAACAATGAGTGGCCAGGCTTTTATATTTCTGTTACAAACCATATATTTAAGTATGAATCATGTATATGAATCATAATCATGTGTACTTGAATCATGTATAAT

Function

NR:

description
sodium/potassium/calcium exchanger 2-like

GO: NA

KEGG:

id description
K13750 SLC24A2, NCKX2; solute carrier family 24 (sodium/potassium/calcium exchanger), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933583.1 True 4380 mRNA 0.45 10 61890479 61909268
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Neighbor

gene id symbol gene type direction distance location
LOC118936725 LOC106602589 coding upstream 13480 61869653 ~ 61876999 (+)
tmem132a LOC106602589 coding upstream 22279 61860456 ~ 61868200 (+)
LOC110534451 LOC106602649 coding upstream 37173 61848154 ~ 61853306 (+)
LOC110534447 LOC106602588 coding upstream 45744 61835024 ~ 61844735 (+)
LOC110534449 LOC106602587 coding upstream 55858 61821751 ~ 61834621 (+)
LOC110533179 LOC106602594 coding downstream 22687 61931955 ~ 61939543 (+)
LOC110534457 cplx1 coding downstream 80503 61989771 ~ 62000427 (+)
LOC110533181 LOC106602599 coding downstream 144141 62053409 ~ 62057954 (+)
LOC110534462 LOC106602598 coding downstream 160995 62070263 ~ 62079303 (+)
LOC110534464 LOC106610074 coding downstream 247356 62156624 ~ 62272182 (+)
G911749 NA non-coding upstream 34189 61855973 ~ 61856290 (+)
G911729 NA non-coding upstream 91814 61798421 ~ 61798665 (+)
G911728 NA non-coding upstream 94227 61796047 ~ 61796252 (+)
G911726 LOC106602585 non-coding upstream 99909 61789378 ~ 61790570 (+)
G911722 NA non-coding upstream 111340 61778922 ~ 61779139 (+)
G911781 NA non-coding downstream 177 61909445 ~ 61909921 (+)
G911784 NA non-coding downstream 9716 61918984 ~ 61919286 (+)
G911787 NA non-coding downstream 15855 61925123 ~ 61925403 (+)
G911770 NA non-coding downstream 31155 61940423 ~ 61940803 (+)
G911807 NA non-coding downstream 68447 61977715 ~ 61985410 (+)
G911667 NA other upstream 198841 61691269 ~ 61691638 (+)
si:dkey-9i23.4 LOC106596523 other upstream 230979 61649733 ~ 61659500 (+)
G911652 NA other upstream 232053 61657327 ~ 61658426 (+)
G911611 LOC106609905 other upstream 321417 61566357 ~ 61569062 (+)
LOC110533174 LOC106602527 other upstream 708209 61146124 ~ 61185835 (+)
G912025 LOC106602626 other downstream 328709 62237977 ~ 62335475 (+)
LOC110534674 LOC106602611 other downstream 536342 62445576 ~ 62449042 (+)
LOC110534616 LOC106610074 other downstream 627188 62398688 ~ 63503034 (+)
G911920 zn271 other downstream 631532 62540800 ~ 62591739 (+)
LOC110534617 LOC106602493 other downstream 794691 62703911 ~ 62726488 (+)

Expression

LOC110534454(LOC106602593) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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LOC110534454(LOC106602593) Expression in each Bioproject

Bar chart with 12 bars.
LOC110534454(LOC106602593) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 800.
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Co-expression Network