LOC118936887 (LOC106610102)


Basic Information

Item Value
gene id LOC118936887
gene name LOC106610102
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 62999009 ~ 63005547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934516.1
TGAACAGTGACCAATAATAATTTAGCCACTTAACGTTTTAGTTATTTAGGCGTTTGTTAACACCGGGGAACTCAAAATATGACTTATTTAACTTCCCAGCATCACATACTTACCCCCAAGTGGTGTTTAATTCGTGTTTGAGAAAGCACTTGTTGATATATGTTATCTAGGTAATGGTATTTAGCTAGCAGCTAAGAATGGCTAACTGTAACGatatggtttttcacactcaaatagcctccatcatggaggtTCTAGCGAATacagccgtggcagagatctgtaaactcgtagatgacgactatgcagtgtttcgtttggaaataactcaaagccagaaagaaaacagggcatTGCGGAGGAAGCTACAGCTACTGGAACTGAAGGTGGCACGGGAACGCCGTCCCAGTAGTGCCAAGATCCTCGAGcgatacagaggaatggcaagaggtgaaggacatctcactggaggTCACAGGGGCTTTGTGAAGCCAGTgggacacaatacatggagagatgaccaaccaattacagttgatgaggggagtggaacctcaacccagcatgTTATCGTGATAGAGTCTGCAGAGGCTGCAGGTCCTGGGGTGAAGCTAGAGGggtctgaaggagaggaggacccacGGCACAGGAGAGACATCCAGACTGGAGTCGAGGACCCTACCACCGCCGCAGCGCAGCCCAGGACTCGACGCAGTatcacggaggtcagtggaacgcTGACCGCCGTCCTCAAGTCAAAGACGGACACCAAGACTTTAACTGTAACTCACAGTCTCTTACATACAGGACATGACCACATGTCAGACCCCGGTCTGGGGAGCCTGGTCTGTCCTCCTGCTTCCAGCTCAGACTATTTACCGGTATTTCACCAGAGCCAGAGGCCTGTTCATTCCCGTGGGGATGGAGACACGTTAGATACTGGTGGTGATGATCCTACTTGTTCTTACATTACAGAGGACCCAGAGGACCTCAACATGCCCttgggtttagagacacaggCAGATCTGTCTATAGGGGACTGGAACCAGTACAGTAGTAGCGTATACTCTGAAGGGTACTTAGATAAGAAAGGGGAGGGGCTGGTCATAGATGAAGTGACTGTGAAATTGGAGGGTGATGTCCCTCCCACATGGAATGCAGATCACCTAAGAGAAGGCCACTCGCAGGGCAGAGATTTCTTAGACTACAGGGAAAGCTTAGAGACAAATCCAAATGTTGCGACCCACTCCCCTTTACACACGCTCAGAGAGCGCAACCCTGTGTCCACGTCGATGGGGTCTTCTGATTCACACGGCCACATCCTTTTCgatcaggtattgaactcaaacAGGGATAAAACCCAGGCTTGGGGAGGGGGAGCAACATCAGGCAATAGTAAAGAGAAACGGTTCCTCTGCATattctgtaacaaaggcttcagctgcccccagaaggtggagatccaccagagggtccacacaggagagaaaccattcaGCTGCACCCAGTGCCACATGCGCTTCACCGAGGCTGGCACCCTGAAgcggcaccagagggtccacacaggggagaaactttacagctgcccccagtgtgagaagaggttctcccgcCAGGACAAACTGAAGaggcacctgaaggtccacacgggAGAGAGGCCGTTCGCCTGTACGCACTgcgggaagaggttctcagagaggagctacctcagAATACATCAGGAAAAAACCCATTCCACTCTAACATAGAAAGTAACCATTCCATTTGATAGCTTCTAGATCAAAGCCACATTGAAGATAGACTTtcaatttccgcaacaactaagagcgttggAAGTGCAAGGCCCAAACACTGGAATATAcacagtgcacaaaacattaggaacacatgacatggactgaccaggtaaaagctatggtcccttattgatgtcacctgttatatccacttcaattagtgtagatgaaggggaggagacgggttaaagaaggattgttaagccttgagacaattgagacatggattgtgtaggtGTGCCATTCATAGGGTGAATTAGCaacacaaaatattgaagtgcctttgaacactGGAtgcaaatgacatccagccaacttgacacgacAGTGGGAAGCCTTCGAGtcagcatgggccagcatccttgtggaatgctttcgacaccttgtggagtccatgccccaacgaattgaggctgttctgagggtaaaatggggtgcaactcaatattaggaaggtcaaatcaaattgtgtttgtcacatgcgccaaatacaacaggtgtagtgtagaccttaacacttatttttcttaactgcattgttggttaagtaaacacttttaaataacaaataataattaaagagcagcagtaaaataacagtagcgaggctgttACTAACcagtgcgggggcacaggttagtcaaggtaatatgtacatgtaggtagagataaagtgactatgcatagatatatAAACAGAGTAAAAGAGTGGGTGCAAATagactgggtagccatttgatcagctgttcaggagtcatatggcttgggggtagaaactgttaagccttttggacctagacttggtgctctgctaccgcttgctgtgcggtagcagagaacaggtgtacctaatgttttgtacactcactgtataaGACATGTATAAGCCTAATGCATCTTTCATGACTTCCATTGAACTACTTAATTTTTCCCCCCAATATTATTTTGTGAAAATGAATGCAATTCATCAGGTTCATGCAGCTCTGTAGTTGAGACAACGTGTGTGTGGTTTTCATAATGGTGTATTTAACTTGTTTGTTTAATAAACACAAAATGGGACTTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934516.1 True 2860 mRNA 0.47 3 62999009 63005547

Neighbor

gene id symbol gene type direction distance location
LOC110534626 LOC106602412 coding downstream 9445 62890946 ~ 62989564 (-)
LOC110534714 LOC106602474 coding downstream 49010 62946717 ~ 62949999 (-)
LOC110534640 LOC106602426 coding downstream 66345 62905999 ~ 62932664 (-)
LOC110534683 LOC106602430 coding downstream 98436 62893733 ~ 62900573 (-)
LOC118936892 LOC106602438 coding downstream 114143 62875854 ~ 62885751 (-)
LOC110534632 LOC106602607 coding upstream 6588 63012135 ~ 63207188 (-)
LOC110534638 LOC106602611 coding upstream 8563 63014110 ~ 63017231 (-)
LOC110534668 LOC106610080 coding upstream 14588 63020135 ~ 63041803 (-)
LOC110534624 LOC106602416 coding upstream 53801 63059348 ~ 63076327 (-)
LOC110534713 LOC106610072 coding upstream 68082 63073629 ~ 63074818 (-)
G914292 NA non-coding downstream 155460 62842599 ~ 62843549 (-)
G914410 NA non-coding downstream 179899 62786140 ~ 62819110 (-)
G914356 NA non-coding downstream 285558 62704942 ~ 62713451 (-)
G914210 NA non-coding downstream 397650 62600719 ~ 62601359 (-)
G914557 NA non-coding upstream 122578 63128125 ~ 63128778 (-)
G914254 NA non-coding upstream 301468 63307015 ~ 63308379 (-)
G914671 NA non-coding upstream 401108 63406655 ~ 63407228 (-)
G914240 NA other downstream 76610 62912029 ~ 62922399 (-)
G914397 LOC106602503 other downstream 188157 62767720 ~ 62810852 (-)
spink4 LOC106602601 other downstream 938346 62057951 ~ 62060671 (-)
LOC110534459 LOC106609881 other downstream 952726 62038842 ~ 62046321 (-)
G914237 zn214 other upstream 55127 63060674 ~ 63565890 (-)
G914239 NA other upstream 178112 63183659 ~ 63255230 (-)
LOC110534627 LOC106602448 other upstream 330183 63333077 ~ 63564917 (-)
LOC110534649 LOC106602417 other upstream 530775 63534433 ~ 63543216 (-)
G914871 LOC106610142 other upstream 701737 63707284 ~ 63708107 (-)

Expression

LOC118936887(LOC106610102) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC118936887(LOC106610102) Expression in each Bioproject

Bar chart with 21 bars.
LOC118936887(LOC106610102) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network