XLOC_002756 (si:ch1073-143l10.2)


Basic Information

Item Value
gene id XLOC_002756
gene name si:ch1073-143l10.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22907351 ~ 22912255 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005107
GCCGCAAAAGAACAAAATAATCGCAACGCGAAGTGGACTGGATGGCTTTCTGGGTAAAGTTTAACTAGTGATTAAAGCGATTTGCGCTTCAGCTAGAGCAAGCCTGTCACATACATCAATTGCCCATGGTATTTCGTGCCGTTCAACGTGAAAACACTGTAATAATACAATACGAGAGAGGGAAATAGGTGGATTTTTTGAGACCATGGAGTCTTGGAAGAGTCACGTGCGCGTAGAGCTGTTTCACAGAGACTGCAGGCAGAAAGATCCGTTCTCTGGCCTCTTCCACAAAGTGTCCAAGCTGGAGGAGATGTTGGACTTTCATGTTAAACTCTGGCAAGGCATGGACACAAACAGTTCTGAAGAAAATACTGGATCTAGATGTCCTGATGAAGGTGGGACGCTCTATTTGAGAGTGAATGAGATGGAACTTTTTAATCAACAGcTCAAGCAGAAAATTTCAGATCTGACCagcaatatttaccttaaggATGCAGAATTACAATACTGTCACTCACAAGTGTCCCGTTACAGGACAGAGGCAGTAATGTTGGCCCAGGGGTCCTCATGTCTGAAGGCTAATCTAGAAGAACATGAGTATGAGCTGGAGTGTCAGTCGAAGGAGCTGATGGCACTGAGAATGGAGCAGAAGACACTGAAAGAGCAGCTTTCAGCCGCAAACCTGCAGAACGAGCAGCTCCTGGAACGCTGGCTGGAGGAGAAGAAAGAGGAGGCCAAGAGGATCAATAAACACAACGCAACACAAGAAAGGTGGCAGCGTTTGGCTGGTTGTCTAAAGAAGCGGTATCGCGCCAGGTCTCGCCCACCGTGTGCAACAAACAGCTCCGAAAACAAACCTTCAGAATCCAAAATTCAGCGCCCTCCATCTTAACACTTACTTAACGACGACAAATGTGACATTTTATAGAGTTTTTGGTGTTTTTTGTTCACTCTGGGAGGTCATTTCACATTCAGCATTCGAGAAAGCTGTTAAAATGAGACGTGAGGCCAAAAGGGTGGATTGCTGAATGTAAAGGCGAGTGATAAAGCTAGCGTTAAATGGTTTACagtttacaatatttaatttgcTAACAATAGTTCAAACATTTATAAACTGTGTTTTTAGCATTTAGGTCACAGCTAATGCTAACAGATAAACATTTAGAATATAAGTGTAAGCAAGAAATGTTGTGAAATGTTTCTATgagttaattttaaataacaaatgaaacTTGAAATTGTTACTAAcgttacaaatatttaataacaaccagtttgtattagtttttttttatttaaaaaaagttaaataaaaatccagttttaaaacaaaaaaataaaa
>TCONS_00006042
GTCCTGATGAAGGTGGGACGCTCTATTTGAGAGTGAATGAGATGGAACTTTTTAATCAACAGcTCAAGCAGAAAATTTCAGATCTGACCagcaatatttaccttaaggATGCAGAATTACAATACTGTCACTCACAAGTGTCCCGTTACAGGACAGAGGCAGTAATGTTGGCCCAGGGGTCCTCATGTCTGAAGGCTAATCTAGAAGAACATGAGTATGAGCTGGAGTGTCAGTCGAAGGAGCTGATGGCACTGAGAATGGAGCAGAAGACACTGAAAGAGCAGCTTTCAGCCGCAAACCTGCAGAACGAGCAGCTCCTGGAACGCTGGCTGGAGGAGAAGAAAGAGGAGGCCAAGAGGATCAATAAACACAACGCAACACAAGAAAGGTGGCAGCGTTTGGCTGGTTGTCTAAAGAAGCGGTATCGCGCCAGGTCTCGCCCACCGTGTGCAACAAACAGCTCCGAAAACAAACCTTCAGAATCCAAAATTCAGCGCCCTCCATCTTAACACTTACTTAACGACGACAAATGTGACATTTTATAGAGTTTTTGGTGTTTTTTGTTCACTCTGGGAGGTCATTTCACATTCAGCATTCGAGAAAGCTGTTAAAATGAGACGTGAGGCCAAAAGGGTGGATTGCTGAATGTAAAGGCGAGTGATAAAGCTAGCGTTAAATGGTTTACagtttacaatatttaatttgcTAACAATAGTTCAAACATTTATAAACTGTGTTTTTAGCATTTAGGTCACAGCTAATGCTAACAGATAAACATTTAGAATATAAGTGTAAGCAAGAAATGTTGTGAAATGTTTCTATgagttaattttaaataacaaatgaaacTTGAAATTGTTACTAAcgttacaaatatttaataacaaccagtttgtattagtttttttttatt

Function

symbol description
si:ch1073-143l10.2 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane.

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0039689 negative stranded viral RNA replication biological_process
GO:0000421 autophagosome membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-863 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane.

Ensembl:

ensembl_id ENSDARG00000094899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005107 False 1342 mRNA 0.40 6 22907351 22912255
TCONS_00006042 True 913 lncRNA 0.40 4 22907397 22911674

Neighbor

gene id symbol gene type direction distance location
XLOC_002755 and3 coding downstream 52593 22848556 ~ 22854758 (-)
XLOC_002754 vamp2 coding downstream 61866 22838364 ~ 22845485 (-)
XLOC_002753 per1a coding downstream 75740 22809715 ~ 22831611 (-)
XLOC_002752 pcolcea coding downstream 103497 22789319 ~ 22803854 (-)
XLOC_002751 AL807389.3 coding downstream 155003 22752232 ~ 22752348 (-)
XLOC_002757 rnasekb coding upstream 3858 22916113 ~ 22918214 (-)
XLOC_002758 FP102052.1 coding upstream 48125 22960380 ~ 22970723 (-)
XLOC_002759 nle1 coding upstream 158486 23070741 ~ 23099869 (-)
XLOC_002760 cadm2a coding upstream 304423 23216678 ~ 23379146 (-)
XLOC_002761 NA coding upstream 600867 23513122 ~ 23519215 (-)
XLOC_002750 NA non-coding downstream 299636 22604273 ~ 22607715 (-)
XLOC_002749 NA non-coding downstream 340143 22554349 ~ 22567208 (-)
XLOC_002748 NA non-coding downstream 372427 22530785 ~ 22534924 (-)
XLOC_002745 NA non-coding downstream 415893 22481158 ~ 22491458 (-)
XLOC_002762 NA non-coding upstream 605806 23518061 ~ 23520243 (-)
XLOC_002763 NA non-coding upstream 636721 23548976 ~ 23549882 (-)
XLOC_002764 NA non-coding upstream 868287 23780542 ~ 24049205 (-)
XLOC_002768 CU467963.2 non-coding upstream 1471011 24383266 ~ 24383381 (-)

Expression


Co-expression Network