LOC110534493


Basic Information

Item Value
gene id LOC110534493
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 65680182 ~ 65690652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034202.1
GCGCCCGGGTAATTACTTTAAGCTGAAATGGAGCGGCTCTCGTCAAATCCACACAATGCAAGAGGTGTGTTTGTTCAGGCAGGAGATCACAACAGTGCTTCATTGTACTCTTTAGTCATGTGTTGTATTCAATTCATAGAGCGTTCTTTTTCTTGGGAGAGGAATTTCTCTTGATAGACTACATACAGCAAGACACAGCCACAGAATCCCAACAACAatcaacacacacagaaaacacaggaTGCACAGTGCAGAACATCAAATCAAAACCCTCACACACAGCCAGTAAAAACAAGCAGGGTTTAGGGAACAATCTTGAAGAAACATAGCAGTGGAGAAGTGATTAAGGACTTCTCCCCCGGCTTAGCCACATCTGGGTAGGGAAGGTCTCAGATCTGCTACTTTTGGTGCTCGCTCTGTAGGTCTATGATCAGACTTTACTACAGAGACTGTGTGGTCTCACTCTGCCAGCTGGCACCTGCTGAGCTCCCAGCATCAAGACAGGTCCCCACATGACCTAGATTTTTCACCTCTCCAACAGCTTCAGCCAGCTAGATGCCTGGGAGCTGAGCTAAACAACAGTTCGTACAGGGCCTAGGGGAGCTCTACTGTGAGGAGGAAGGATGATTGAACGGGAGCTGGAGTATTGTCCAGTATAGCCAGAGAAGACATCTCAGAGTTGTCACACAGGGGCTGATGGGATAGCTAGCAGAAGGGGTGGAGGACTGAGGACGCTCACAGCCAGAGTTGTGTAGGAGGCTCTCTGGAGGACTGGGTCTTGACTCTAAGGGTATGTGAGCATCAGTTGAACTTTTATATCACACTGGGAATTTGATCTTTCTATTACTGTATTTCAGTTGTTGTATACGATGGCCTCAATAAtactttactaagacacttttGTCCAAATCAGTTCCAACCAGTAGCTTCTGTTGCATTATCCGCCATGTGATGACTCCAACCTCCATTGATAAGTGACGACTcctagagggggaaaaaaaaaaaacttgaaagcTGTACATTTTTCTATCTTTAACCAGcaaacagagatacagtagacATTCTAGAATGGACTGACATCATTAGTTCAACATCTGCTTCTACTTGTCATTAGATAGAGGTATGGGGAGTTCTTTAGAAGAGTCTCCAGATCAGACAGATGTGGTGTAAAAGATTCCTTCCTACCTGGGCCATGGCTGACACAGTATCCAAGAATCCCTTTGCAGTGGATagggacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgggccgTGGCTGTGGAGAGGGTCAGTCTGGTCTCCAGCAGTAGCACTCTGCTCTCCAGGTTCTCCCACTGGTGCTTGTCTATAGTGATACTCCCGGCCGAGGCCTTCTCTAGAAGCTCCAGCCTCTGCTCCAGGGCCAAGAGCATCCCCAGCCTAGTCTGGATCTGCGGCAGCTGGGCCTCCAGCACTGCCagcctcccctccaccaccaggTCCTGGAAGGGTGGTCACAatccattctgtgtgtgtgtgtgtgtgtcactttggtgctgtgtgttacagagagaagggccgtgtgtgtgtctgtgcttatAATTGTGGAGAAGTATGCTGGTACTCACTGTTTGAGGGACTGTAGGTGCTTGGTTCTGGACCTCCTCCAGTCCcagcccctcctcctcttcctcagactctTCATTATCAGAGGTTCTACTAGAGGAGACCCAGGAGTCACCACCAATGTGTCTCTCCACTAGTGGCCTGCTTAGGGACAACTGTGGGAAAGAACCATCTCACCTAGTCATGTTAAGGTCGGGCCATGTACTCATGCAGCATTACAATGGAcaattttattattttaaaatgttttatttaatctttatttaactaggatagGTCAGGCCTTTTTGATAAAGTGTAGAGAGTTGAACAGGTCTGTTGGGCTACACTGTCATGTCCTTGGCAAAGACTTACTGTGGTAGCCATGGGGTTCATTGTTTCAGCCTGAAATGGGAGAGCCTCACTTTTGGAGTCTGAACTCGAGGCCTGAAAACGAGCTCTCGGCTTTGGCTGCAACACACAGATGCAATACATGGaccttttattttaccagGGCGAAggaaatgacatcacagaggatgCAGGTCTTTCTTTCTGCAAAGCCAAACTGGAGGAACTGCTGCTTGGTCAGGACGGGTTTGTAGTGGAAGAGATCCCGCAGTACCTAGATGTGGGTGAACAATagacagtatcacacacacacacggctgaatTTGCCCTGCTGAAAAATTGTTTCAAATCAAAAATACACCATGGTTGTTTTTTCATTCAAACAGTAAAAAATGCAAAGAGCAAAACCATAttcattgaattgaattgaatgtcattgaaatGACATTGCAAAGTATCTGGTACAGGGGTTTTAAACTCATTTTGCGCCGGGGGCCACATTCGTTCTTCAAGAAGGTCCAGAGGGTCACACACATTGCTTTTGCAATTTGATGCTACCCGACTGTCTCGGTTTCATTTGAATGATTAttagtgagctggacacagtcaagaaacAGTATAAATGTAGGTCCATTATATTTTCTACAGTTTCCATTTGGTTGTAATCATTTTTTTAAAAGTATATGGAGTTTGTTTTCCCTTCCAAAAAATGATGTGAATTAAGTGTATCGAGGCAAGGGATACACATGAAAAGGGAATAATAGGAGCTGGAACACATATGACAAATCCAAACATTCTACTGATAATTGTAAAACTCACTATAGTTGACATGAGTTCAGGGAAAGATGGCAGTAGGTATGACAGGAGGGCTAAATGAGTGCTTCCCTGTTACACCGACTATAATGGAGAGCAAATGGCTTGTCTCCTCTTTGCACCGTCTTCTGTATGAAATGCTGCTGGTGTGTCGGCCCAATCTGTCTCccatatttttgtgtgtgtgtgcaggccagGCGAAGCAGTGACTGGGCGCCAGCCAGAGGGTCTCgctcttccttctccctctcctctcgccAAAATGAACCGATGCTATGAGAGGCAGATAGCTCGCCTGCGGCTTCAGCACTAAGAGAACAGAAGACGGGATTCTGATCCGAGATGAGAACTTGGACCAACATGGAGTTCCTGTATTTACCGCAGGAATCAGGATTTCATGTGAgcctttataaaataattgctcAAGGACGCTGTGCTGCCGACCACCGGTTGCCAGCTGGAAGGAAACACCAGAGAGTGTTTTAAATACAGACGCTGCAGATCAGGGCCCGCTCAGTGAAAACCCTTCTGGTTCTGATAGCAGGGTTAACAGGCTACAGTACAGCCTCAACAAAAAGACTGAAAAACCCCTGATGCATGTACACAAGTCATTCCTTCCAAGTCCTCAGTTGGTTGTGATGAGAGAGGAGCTGTAATATTAGAACGTGAGATGAAGGAAATGGCTTAGCCTTGACCTGACCAAGCACAATATTGTGAAAAGGGGAATTCCGACAGTGGGACATTTCCCATAGATAAGAATGAATGGAATTTCTAGACTACTTTAAGACTCCATTCATGTCATTTGAGCACCACAGGAATGAAAAGGAATCCCACATGTAGCCTACCTTTAACTTCTACAGGGGAAACCCTGCACTGTTTCAAAATGACTTTATTGGTAGTGAGTGATGCAATAGCAATGTATtccatgtgtgtgtattaggggaAAATATTGCAGTTCAGCTCAAGCTTGGAGGGGTTAAACCACAGCAGAGCGTCTGGGTAGACAGCCATTGGCCTCAGGAGACCCCAAGGAATAAACTGAAGTCacagtgtg
>TU1042175
AATCCACACAATGCAAGAGGTGTGTTTGTTCAGGCAGGAGATCACAACAGTGCTTCATTGTACTCTTTAGTCATGTGTTGTATTCAATTCATAGAGCGTTCTTTTTCTTGGGAGAGGAATTTCTCTTGATAGACTACATACAGCAAGACACAGCCACAGAATCCCAACAACAatcaacacacacagaaaacacaggaTGCACAGTGCAGAACATCAAATCAAAACCCTCACACACAGCCAGTAAAAACAAGCAGGGTTTAGGGAACAATCTTGAAGAAACATAGCAGTGGAGAAGTGATTAAGGACTTCTCCCCCGGCTTAGCCACATCTGGGTAGGGAAGGTCTCAGATCTGCTACTTTTGGTGCTCGCTCTGTAGGTCTATGATCAGACTTTACTACAGAGACTGTGTGGTCTCACTCTGCCAGCTGGCACCTGCTGAGCTCCCAGCATCAAGACAGGTCCCCACATGACCTAGATTTTTCACCTCTCCAACAGCTTCAGCCAGCTAGATGCCTGGGAGCTGAGCTAAACAACAGTTCGTACAGGGCCTAGGGGAGCTCTACTGTGAGGAGGAAGGATGATTGAACGGGAGCTGGAGTATTGTCCAGTATAGCCAGAGAAGACATCTCAGAGTTGTCACACAGGGGCTGATGGGATAGCTAGCAGAAGGGGTGGAGGACTGAGGACGCTCACAGCCAGAGTTGTGTAGGAGGCTCTCTGGAGGACTGGGTCTTGACTCTAAGGGTATGTGAGCATCAGTTGAACTTTTATATCACACTGGGAATTTGATCTTTCTATTACTGTATTTCAGTTGTTGTATACGATGGCCTCAATAAtactttactaagacacttttGTCCAAATCAGTTCCAACCAGTAGCTTCTGTTGCATTATCCGCCATGTGATGACTCCAACCTCCATTGATAAGTGACGACTcctagagggggaaaaaaaaaaaacttgaaagcTGTACATTTTTCTATCTTTAACCAGcaaacagagatacagtagacATTCTAGAATGGACTGACATCATTAGTTCAACATCTGCTTCTACTTGTCATTAGATAGAGGTATGGGGAGTTCTTTAGAAGAGTCTCCAGATCAGACAGATGTGGTGTAAAAGATTCCTTCCTACCTGGGCCATGGCTGACACAGTATCCAAGAATCCCTTTGCAGTGGATagggacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgggccgTGGCTGTGGAGAGGGTCAGTCTGGTCTCCAGCAGTAGCACTCTGCTCTCCAGGTTCTCCCACTGGTGCTTGTCTATAGTGATACTCCCGGCCGAGGCCTTCTCTAGAAGCTCCAGCCTCTGCTCCAGGGCCAAGAGCATCCCCAGCCTAGTCTGGATCTGCGGCAGCTGGGCCTCCAGCACTGCCagcctcccctccaccaccaggTCCTGGAAGGGTGGTCACAatccattctgtgtgtgtgtgtgtgtgtcactttggtgctgtgtgttacagagagaagggccgtgtgtgtgtctgtgcttatAATTGTGGAGAAGTATGCTGGTACTCACTGTTTGAGGGACTGTAGGTGCTTGGTTCTGGACCTCCTCCAGTCCcagcccctcctcctcttcctcagactctTCATTATCAGAGGTTCTACTAGAGGAGACCCAGGAGTCACCACCAATGTGTCTCTCCACTAGTGGCCTGCTTAGGGACAACTGTGGGAAAGAACCATCTCACCTAGTCATGTTAAGCCTGAAATGGGAGAGCCTCACTTTTGGAGTCTGAACTCGAGGCCTGAAAACGAGCTCTCGGCTTTGGCTGCAACACACAGATGCAATACATGGaccttttattttaccagGGCGAAggaaatgacatcacagaggatgCAGGTCTTTCTTTCTGCAAAGCCAAACTGGAGGAACTGCTGCTTGGTCAGGACGGGTTTGTAGTGGAAGAGATCCCGCAGTACCTAGATgccagGCGAAGCAGTGACTGGGCGCCAGCCAGAGGGTCTCgctcttccttctccctctcctctcgccAAAATGAACCGATGCTATGAGAGGCAGATAGCTCGCCTGCGGCTTCAGCACTAAGAGAACAGAAGACGGGATTCTGATCCGAGATGAGAACTTGGACCAACATGGAGTTCCTGTATTTACCGCAGGAATCAGGATTTCATGTGAgcctttataaaataattgctcAAGGACGCTGTGCTGCCGACCACCGGTTGCCAGCTGGAAGGAAACACCAGAGAGTGTTTTAAATACAGACGCTGCAGATCAGGGCCCGCTCAGTGAAAACCCTTCTGGTTCTGATAGCAGGGTTAACAGGCTACAGTACAGCCTCAACAAAAAGACTGAAAAACCCCTGATGCATGTACACAAGTCATTCCTTCCAAGTCCTCAGTTGGTTGTGATGAGAGAGGAGCTGTAATATTAGAACGTGAGATGAAGGAAATGGCTTAGCCTTGACCTGACCAAGCACAATATTGTGAAAAGGGGAATTCCGACAGTGGGACATTTCCCATAGATAAGAATGAATGGAATTTCTAGACTACTTTAAGACTCCATTCATGTCATTTGAGCACCACAGGAATGAAAAGGAATCCCACATGTAGCCTACCTTTAACTTCTACAGGGGAAACCCTGCACTGTTTCAAAATGACTTTATTGGTAGTGAGTGATGCAATAGCAATGTATtccatgtgtgtgtattaggggaAAATATTGCAGTTCAGCTCAAGCTTGGAGGGGTTAAACCACAGCAGAGCGTCTGGGTAGACAGCCATTGGCCTCAGGAGACCCCAAGGAATAAACTGAAGTCacagtgtgcgagtgtgtgtgtccgTTGCCTGTGAGGAAACAACTGGAAACACtttgccattttgaaccattaCGGCGATAACTGTGATGTATGAGAGAGGGGATCTAGAGGAGAGTCCCTGCTATTGGGAGAAACTGTTCCGTGTTAGGGAGACGACACTGCATGGGGCCACATGGGGAGAGCGGTGGTGGGGAGCCTACTGGAAAAGTAGGACCTAGGAAAGATCCCAGCACGCAGTGAATGAACAGAGCATTAAATCATAGGGAGGGCATGAAGGAACGAGCCTGGGAGATAATACAGTCAACTGGGGAGTGATGCCAATGTGTTTCTCAAACGGGTAGGTCTAGATGTGGGATTGCTGCAGGGGGGGGAATACATTCAAAAACATGATTTCATCACGAAAGATGTTAGTCATTAGAGCACAGACGCTCTGCGTCTTCTTCCTACCATACTAATGGAGACCTATGGAGTAAAATCCCTCAACTGTGCATGATGATAGTTAAATACTAAGGCTATGTCACAGAAACATGTTAACCTACAGtacccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataatagtcaagacatcaaaactatgaaataacacagaatcatgtagtaaagtGGGCATTGCGtcaaagaagcagtgcggcttggttgggttgtgtttcggaggacgcacggctctcgaccatCGCCACTCCCGAGTCTGCACGGGAAGACTATAACTAACAATTGGATAttgcattcctcatgaagcaggttgagagaatgtcaagagtgtgcaaagctgtcaaggcaaagggtggctactttgaagcatctaaaatatattttggtttgcttaacacttttttggttaccacatgattccatgtgtgttgtttcatagttttgatgtcttcactattattctacaatgtggaaaataaagaaacccttgtccaaacttttgacaggtactgtacacTATTACccttaagattttttttttttaaagaacacaATAGAATCAATGTGTGGATTTACCTTGTAGATGCATTCGATAAAACGTAGGTCGTTCTTCCCAGTGAGTTCCACTCCGAAGCCCACCAGGTGTTCAGCAAGGTGTGGTGAATAGGAGATGAATGCATAACTCACTATGGGAAGAAAGGCAGAAGGATCCCCTTTGGCCAAGCTGTAGAGATAAAGCATAGATTGTGTTTTACAATGTGTACTACTGTTTTCATATGCATTAGTATCATTGAGGCCTAAAAATATGACAATAATGCTCTGTTCAGACAGTTAGACCGATTTTAACAACAACaatttttgaccaatcagatcagctctcaTAAAGatctgaaaagatctgatgtaattggtcaaaataccaattagtggaaaaaataagaaattacctgcctgtctaaacgcagcccaACGCACATTTTGGCATCAATGGAACCCAAACGAGTTCGATAAAaactagaaaaaaatatatacatttgaaaAGT

Function

NR:

description
centrosomal protein of 44 kDa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034202.1 False 3838 mRNA 0.46 5 65680182 65689120
TU1042175 True 4408 lncRNA 0.46 7 65680227 65690652
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534489 LOC106602382 coding upstream 21496 65632847 ~ 65658686 (+)
LOC110533186 LOC106610166 coding upstream 48059 65522742 ~ 65632123 (+)
LOC118936932 NA coding upstream 185280 65488035 ~ 65494902 (+)
LOC118936727 NA coding upstream 246717 65413049 ~ 65433465 (+)
LOC110534487 LOC106602380 coding upstream 271438 65329540 ~ 65408744 (+)
LOC110534492 LOC106610168 coding downstream 7241 65696361 ~ 65709517 (+)
LOC110534495 LOC106610170 coding downstream 115449 65804569 ~ 65806761 (+)
LOC110534496 LOC106602387 coding downstream 122239 65811359 ~ 65841626 (+)
LOC110534497 LOC106602389 coding downstream 156318 65845438 ~ 65847857 (+)
LOC110534507 LOC106610175 coding downstream 654860 66343980 ~ 66357223 (+)
G916431 NA non-coding upstream 63047 65616086 ~ 65617135 (+)
G916369 NA non-coding upstream 164760 65515207 ~ 65515422 (+)
G916366 NA non-coding upstream 166259 65513699 ~ 65513923 (+)
G916364 NA non-coding upstream 166696 65513012 ~ 65513486 (+)
G916344 NA non-coding upstream 179357 65500612 ~ 65500825 (+)
G916488 NA non-coding downstream 76622 65765742 ~ 65767743 (+)
G916707 NA non-coding downstream 423995 66113115 ~ 66113501 (+)
G916715 NA non-coding downstream 444568 66133688 ~ 66133916 (+)
G916717 NA non-coding downstream 446397 66135517 ~ 66135740 (+)
G917126 NA non-coding downstream 462394 66151514 ~ 66151761 (+)
G916281 NA other upstream 226682 65453102 ~ 65453500 (+)
G916075 LOC106602378 other upstream 406421 65272602 ~ 65273761 (+)
G915549 NA other upstream 840861 64838099 ~ 64839321 (+)
G913133 NA other upstream 1138797 64540049 ~ 64541385 (+)
G916697 NA other downstream 396029 66085149 ~ 66085737 (+)
G917796 LOC106602395 other downstream 1068001 66757121 ~ 66757986 (+)
G917798 LOC106613263 other downstream 1070164 66759284 ~ 66759753 (+)
LOC110533189 LOC106610178 other downstream 1169369 66858457 ~ 67246560 (+)

Expression

LOC110534493 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110534493 Expression in each Bioproject

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LOC110534493 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network