LOC110498629 (LOC106602292)


Basic Information

Item Value
gene id LOC110498629
gene name LOC106602292
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 70503337 ~ 70526627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933802.1
GTACAGTAATACAGAGAGGGGTTGGACCACTGTATGTTTGCATGTGGGAGGAGCGCACGCTCAAAGACAAGAGTTCATTTCAGCCATGTAAACATTAGGAGTTTGATCGCTGAAAGAACAAGGCGCACAACTGGAGAGGATCCCAAGCAAGACAGGGGGAAGACATCTTTGCCTCAGTCAAACTAAATACAGTAGGCCCAACAACAAGGACTAATTCCCATTTATCCAGGCCCCTCAGAGGCACTAGCTGACTTTGGGTGAACCAGAGAGCTCTTCATTGGTGTGTGGACAGTAGACAGTGTTGGACCATGGCGCTCGTGGACCCGACTGCATCCCATCTGGACCCGGGCATGGATGGTGAGAGCGGGGTCCTCGCCAGTGTCTTTGGGGTCCTCCCTAACGCCAACTGCCCCAAACACGGGCAAAACACTCCGGAGGACACGAAACGATGCCTACGCAAGGTCATCGGGCACCACAGGGACTACGTCAAGATCTCGCTGCCAGACGCCAAGGGCAACCGGCTGCCCACGGAGTGGTGGAAGACAGCCATAGCGTTCTTCTACGCCATCTTCAACCTAGTCCTGACCACCGTGGTCATCACGGTCGTCCACGAGAGGGTCCCGGAGAAGGAGAACAGCCCGCCACTGCCCGATAAGTTCTTTGACTACATCGACCGGGTGAAGTGGGCGTTCACGGTCACCGAGATCAACGGCATGCTCCTGGTGGGAATCTGGGTTATACAGTGGCTTTTCCTCAGATACAAGTCGATTGCAGGTCGGAGGTTCTTCTTCCTGATTGGCACCCTCTACCTGTACCGCTGCGTCACCATGTACATCACAACCCTTCCTGTACCCGGCAATCACTTCACCTGTGCccccaagcTGTATGGGGACTCTCACGCTAAGATGCAGCGTGTGCTGACGTTGATCTCCGGCGGTGGTCTGTCCATCACCGGCTCCCACCTCATGTGTGGTGACTTCCTCTACAGCGGACACACCGTCATGCTTACCCTCACCTACCTGTTTATTAAAGAGTACTCCCCGCGGACGTTCTGGTGGTACCACCTGATGTGCTGGCTGCTGGCTGCTGTGGGAGTGGTGTGTATTCTGGTGGCCCACGAACACTACAGTGTGGATGTGGTGGTGGCCTACTTCATCACCTCACGCCTCTTCTGGTGGTACCACACCATGGCCAACGTCCAGGCCCTGCGGTGCTCGCCCAACAACTACCTCACCAACACCTGGTGGAACCCCGTGTTCAACTTCTTTGAGAGGAACGTGCAGACCCAGGTGCCCTGCTCCTTCTGCTGGCCAATCACCTGGCCCCCTGCCTGCCTTAAGAACTCCTGTAAGAAGTACAGTGCAGTGCAGAGCCTGCGGGAGGAGTAGGGAGAAGGGACTCCACCCCAGTTCAGGGTCCTTTGAACACCCCAACCTATTTTGTATTCATGCAGGATTTATGCTCTATTATGTGATTTCAAGTATTATTGTGAAGGATAGTTGAAGTTTGTGAGGAAATGGTCATATAGGGAAAGTATGTGAGAAGAATAACATAGTCCACATTGGGTCCTTGTGTACTTCACCACTacaatgtatgttatttatgAGGTCAGTTTATTTGAAAATGTTCTTTATTCTTGTGAATGTTACTGTAACAAACTCAACTGAAGTCAACATGTTGCGATGTCATGCAGCGCTTTGCCACTGGCTTGCAGCTTTACTCAAAACTCCAACATAAAAATTGAATTTTATAGAGCTATACATTATTACGTTTACATCAATTAGATTGAATGAATATtaagtactttaaaaatatactTTCCAAAATGTGCCTTTAAATACAAATGCATGCAATTTTAAATTGCAAACTTTAAGATGTTTGTTTTCAATGTTTTATATTGTGTATTAATTTAATTAGCATTTAGTCTTTAGTCTCATATGATTGTGTGTCCTAATGTACCATCATTTATACCTTCAGAATAAAAAAACAACACGTTGAC
>XM_036933803.1
CTATTAAATAATCTTTATACAAAGGGGTGGGCAGGTACGTAAATAAGTGATGTTTTTGGCGACAGTTTCTGCAGCTGACTGTAGGCTAGGCTGTACAGTAATACAGAGAGGGGTTGGACCACTGTATGTTTGCATGTGGGAGGAGCGCACGCTCAAAGACAAGAGTTCATTTCAGCCATGTAAACATTAGGAGTTTGATCGCTGAAAGAACAAGGCGCACAACTGGAGAGGATCCCAAGCAAGACAGGGGGAAGACATCTTTGCCTCAGTCAAACTAAATACAGTAGGCCCAACAACAAGGACTAATTCCCATTTATCCAGGCCCCTCAGAGGCACTAGCTGACTTTGGGTGAACCAGAGAGCTCTTCATTGGTGTGTGGACAGTAGACAGTGTTGGACCATGGCGCTCGTGGACCCGACTGCATCCCATCTGGACCCGGGCATGGATGGTGAGAGCGGGGTCCTCGCCAGTGTCTTTGGGGTCCTCCCTAACGCCAACTGCCCCAAACACGGGCAAAACACTCCGGAGGACACGAAACGATGCCTACGCAAGGTCATCGGGCACCACAGGGACTACGTCAAGATCTCGCTGCCAGACGCCAAGGGCAACCGGCTGCCCACGGAGTGGTGGAAGACAGCCATAGCGTTCTTCTACGCCATCTTCAACCTAGTCCTGACCACCGTGGTCATCACGGTCGTCCACGAGAGGGTCCCGGAGAAGGAGAACAGCCCGCCACTGCCCGATAAGTTCTTTGACTACATCGACCGGGTGAAGTGGGCGTTCACGGTCACCGAGATCAACGGCATGCTCCTGGTGGGAATCTGGGTTATACAGTGGCTTTTCCTCAGATACAAGTCGATTGCAGGTCGGAGGTTCTTCTTCCTGATTGGCACCCTCTACCTGTACCGCTGCGTCACCATGTACATCACAACCCTTCCTGTACCCGGCAATCACTTCACCTGTGCccccaagcTGTATGGGGACTCTCACGCTAAGATGCAGCGTGTGCTGACGTTGATCTCCGGCGGTGGTCTGTCCATCACCGGCTCCCACCTCATGTGTGGTGACTTCCTCTACAGCGGACACACCGTCATGCTTACCCTCACCTACCTGTTTATTAAAGAGTACTCCCCGCGGACGTTCTGGTGGTACCACCTGATGTGCTGGCTGCTGGCTGCTGTGGGAGTGGCCCTGCGGTGCTCGCCCAACAACTACCTCACCAACACCTGGTGGAACCCCGTGTTCAACTTCTTTGAGAGGAACGTGCAGACCCAGGTGCCCTGCTCCTTCTGCTGGCCAATCACCTGGCCCCCTGCCTGCCTTAAGAACTCCTGTAAGAAGTACAGTGCAGTGCAGAGCCTGCGGGAGGAGTAGGGAGAAGGGACTCCACCCCAGTTCAGGGTCCTTTGAACACCCCAACCTATTTTGTATTCATGCAGGATTTATGCTCTATTATGTGATTTCAAGTATTATTGTGAAGGATAGTTGAAGTTTGTGAGGAAATGGTCATATAGGGAAAGTATGTGAGAAGAATAACATAGTCCACATTGGGTCCTTGTGTACTTCACCACTacaatgtatgttatttatgAGGTCAGTTTATTTGAAAATGTTCTTTATTCTTGTGAATGTTACTGTAACAAACTCAACTGAAGTCAACATGTTGCGATGTCATGCAGCGCTTTGCCACTGGCTTGCAGCTTTACTCAAAACTCCAACATAAAAATTGAATTTTATAGAGCTATACATTATTACGTTTACATCAATTAGATTGAATGAATATtaagtactttaaaaatatactTTCCAAAATGTGCCTTTAAATACAAATGCATGCAATTTTAAATTGCAAACTTTAAGATGTTTGTTTTCAATGTTTTATATTGTGTATTAATTTAATTAGCATTTAGTCTTTAGTCTCATATGATTGTGTGTCCTAATGTACCATCATTTATACCTTCAGAATAAAAAAACAACACGTTGAC

Function

NR:

description
PREDICTED: phosphatidylcholine:ceramide cholinephosphotransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933802.1 False 1999 mRNA 0.49 6 70503337 70526535
XM_036933803.1 True 1986 mRNA 0.48 6 70503337 70526627

Neighbor

gene id symbol gene type direction distance location
LOC110497323 LOC106602293 coding downstream 117 70495169 ~ 70503220 (-)
LOC110497327 hadh coding downstream 7041 70492879 ~ 70496296 (-)
LOC110516757 LOC106610305 coding downstream 148158 70328344 ~ 70355179 (-)
LOC110497342 LOC106610302 coding downstream 228495 70260477 ~ 70274842 (-)
LOC118936737 NA coding downstream 311981 70189227 ~ 70191356 (-)
LOC110534563 aimp1 coding upstream 125734 70652361 ~ 70676356 (-)
LOC118936741 npnt coding upstream 371103 70897730 ~ 70956758 (-)
LOC110497311 gstcd coding upstream 438765 70965392 ~ 71027492 (-)
LOC110497308 arhgef38 coding upstream 505388 71032015 ~ 71051680 (-)
trnaa-ugc-47 NA coding upstream 534192 71060819 ~ 71060894 (-)
G921277 NA non-coding downstream 78610 70424461 ~ 70424727 (-)
G921275 NA non-coding downstream 79719 70423325 ~ 70423618 (-)
G921266 NA non-coding downstream 91639 70411487 ~ 70411698 (-)
G921265 NA non-coding downstream 92198 70410903 ~ 70411139 (-)
G921255 NA non-coding downstream 106592 70395526 ~ 70396745 (-)
G921389 papss1 non-coding upstream 911 70527538 ~ 70533352 (-)
G921401 NA non-coding upstream 32657 70559284 ~ 70560901 (-)
G921414 NA non-coding upstream 49252 70575879 ~ 70576099 (-)
G921446 dkk2 non-coding upstream 82072 70608699 ~ 70611226 (-)
G921646 NA non-coding upstream 170808 70697435 ~ 70697659 (-)
G920994 LOC106610254 other downstream 407512 70089218 ~ 70095825 (-)
cntln LOC106602318 other downstream 787928 69652985 ~ 69791247 (-)
G920582 LOC106610250 other downstream 1498110 69003279 ~ 69005227 (-)
G920579 LOC106610251 other downstream 1502691 69000396 ~ 69000646 (-)
G921673 LOC106602265 other upstream 212208 70738540 ~ 70798813 (-)
G921677 LOC106602265 other upstream 220060 70746687 ~ 70816302 (-)
G921899 NA other upstream 489869 71016496 ~ 71016929 (-)
LOC110533203 LOC106610354 other upstream 554279 71064699 ~ 71121753 (-)

Expression


Co-expression Network