Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110534564 |
| gene name | LOC106593018 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 70738824 ~ 70819464 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036933811.1 | False | 2758 | mRNA | 0.49 | 15 | 70738824 | 70750878 |
| XM_036933812.1 | False | 2739 | mRNA | 0.49 | 15 | 70738853 | 70750878 |
| XM_036933813.1 | False | 2806 | mRNA | 0.49 | 15 | 70738856 | 70819464 |
| XM_036933815.1 | False | 2769 | mRNA | 0.49 | 15 | 70738903 | 70819464 |
| XM_036933816.1 | False | 2898 | mRNA | 0.49 | 15 | 70787514 | 70819464 |
| XM_036933814.1 | False | 2771 | mRNA | 0.49 | 15 | 70797751 | 70819464 |
| TU1047965 | True | 475 | TUCP | 0.53 | 4 | 70815906 | 70816969 |
70,690,000
70,700,000
70,710,000
70,720,000
70,730,000
70,740,000
70,750,000
70,760,000
70,770,000
70,780,000
70,790,000
70,800,000
70,810,000
70,820,000
70,830,000
70,840,000
70,850,000
70,860,000
NC_048574.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110497318 | LOC106610360 | coding | upstream | 1965 | 70676444 ~ 70736859 (+) |
| LOC110534949 | dkk2 | coding | upstream | 127576 | 70592817 ~ 70611248 (+) |
| LOC110497322 | papss1 | coding | upstream | 177905 | 70527490 ~ 70560919 (+) |
| LOC110497329 | lef1 | coding | upstream | 248042 | 70435605 ~ 70490782 (+) |
| LOC100135902 | LOC100135902 | coding | upstream | 409792 | 70323416 ~ 70329032 (+) |
| LOC110491145 | LOC106602268 | coding | downstream | 6819 | 70826283 ~ 70856864 (+) |
| LOC110492555 | LOC106602285 | coding | downstream | 47070 | 70866534 ~ 70875776 (+) |
| LOC110514910 | LOC106602285 | coding | downstream | 58527 | 70877991 ~ 70893771 (+) |
| LOC110497313 | LOC106602288 | coding | downstream | 208102 | 71027566 ~ 71031915 (+) |
| LOC110497315 | LOC106602282 | coding | downstream | 234702 | 71054166 ~ 71062433 (+) |
| G921514 | NA | non-coding | upstream | 9595 | 70728494 ~ 70729229 (+) |
| G921505 | NA | non-coding | upstream | 29774 | 70708297 ~ 70709050 (+) |
| G921503 | NA | non-coding | upstream | 32558 | 70706055 ~ 70706266 (+) |
| G921502 | NA | non-coding | upstream | 33290 | 70705331 ~ 70705534 (+) |
| G921499 | NA | non-coding | upstream | 36783 | 70701813 ~ 70702041 (+) |
| G921586 | LOC107757009 | non-coding | downstream | 102516 | 70921980 ~ 70956737 (+) |
| G921599 | NA | non-coding | downstream | 126761 | 70946225 ~ 70947045 (+) |
| G921606 | NA | non-coding | downstream | 139319 | 70958783 ~ 70959029 (+) |
| G921788 | NA | non-coding | downstream | 154238 | 70973702 ~ 70974067 (+) |
| G921804 | NA | non-coding | downstream | 186952 | 71006416 ~ 71007496 (+) |
| G919839 | NA | other | upstream | 1673129 | 69065442 ~ 69065695 (+) |
| LOC110534534 | LOC106610230 | other | upstream | 2366464 | 68341142 ~ 68372360 (+) |
| G919180 | NA | other | upstream | 2561771 | 68176638 ~ 68177053 (+) |
| G919123 | NA | other | upstream | 2659891 | 68078391 ~ 68078933 (+) |
| G921573 | NA | other | downstream | 78280 | 70897744 ~ 70899209 (+) |
| G921853 | NA | other | downstream | 282756 | 71102220 ~ 71103281 (+) |
| G922568 | NA | other | downstream | 1284876 | 72064731 ~ 72104814 (+) |
| LOC110497298 | vps37a | other | downstream | 1827045 | 72637369 ~ 72648191 (+) |
| G921519 | NA | non-coding | upstream | 71611 | 70743699 ~ 70744295 (+) |
