LOC110514910 (LOC106602285)


Basic Information

Item Value
gene id LOC110514910
gene name LOC106602285
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 70877991 ~ 70893771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989377.1
ATGAAAGTTGACAGGGCTTCTGAACTCCCTGCTGAGGTCCGCTTCTCTTTCACCAAGGACTTGGAGTTCAAGTTCACAGCAGTCGAAGCATTGTTGTCACTCAAACTAGAAACCCATTCCACCAACAAGAAACAATGGAAGAGCCTAGATGAACTCAGTCACGTTTTCAATGGACACAAGACTGACGTCTATGAATATGTCGAAAAGAACTGGAAGGAGGATGAGTTTTTTGGGTACCAGCTTCTGAACGGCCTCAACCCCATGATGATCCATCGCTGCTCCAAGCTTCCAGAGAACTTCCCCGTCACAGAAGACATGGTGAAGGCTTCCCTTTTTGGAAAAAACCTTGAAGCAGAAATTCAGAAAGGCAACATCTTCCTGGTTGACTACAAGCGTCTACATGCAGTGACAGCAAACGTGATCCACGGGAAACAGCACTTCTTGGCTGCTCCTCTCTGCTTGCTCTATGTGACCCCAGAAGATAAGCTCATTCCCATCGCAATCCAGCTGAAGCAGGAGCCTGGAGAAGACAACCCCATCTTCCTCCCTACTGACTCAGAGTATGACTGGCTCCTGGCCAAGATCTTTGTGCGGAACGCTGACTTCGCGGAACACGAGCTGAACTTTCACTTGCTGAGGACTCACCTGCTGGCTGAGGTGTTTGCCGTGTCGACACTGCGTAACCTACCAATGGTGCATCCCATCTACAAGCTCCTGATCTCTCACTTCCGCTACACTCTGCAGATCAACACTCTAGCTAGACAGGCCCTCATATCAGAGAATGGGCTGATCACAGAGAATGCCAGTGTCGGAGGTCCAGGGATGGTTGAGTTCCTGAAGAAAGCTGTGGCCTCATTGACCTACAGCTCCCTCTGTATGCCGGAGGACATCACAGCACGTGGTCTGGAGTCAATCCCCAACTTCCTCTACAGGGATGATGGACTCAGGTTGTGGGACATCGTTCACAGGTTGGTTCACAATGTGATTGGTCACTACTACACCTGTGACTCAGACGTCCAGAAGGACTCTGAACTGCAGAACTGGATCGAGGAGATCTTCTTCCATGGGTTCCTGGCAGAAACCAGCACAGGAATCCCTCAGTCTTTCAGTTCAGTGACAGAGCTGGTCAAGTTTATCACCATGGTGATCTTCACAGTGTCTGTCCAACATGCTGCAGTCAACAATGGACAGTTTGATTTTGGGGGTTGGATGCCCAACTTCCCCAACGCTCTGCAACAACCACCTCCCACCACTAAGGGGCAGTGTACTGAGAGCACCATGCTGAAGACCTTCCCTGACATCAATACCACCGTTAATGGCATGGCAGCGGTGTACCTTCTGAGCAGGCAGTCCACTGACTATGTCGCTCTTGGAAATGGCTATCAGGATCACTTCAGTGAGAAGACCCCTCTGGAACTGATTCACGAAACTCAAAATGTGCTGAAGAAATACAACTTTGAAATCCAAGGCAGGAATGTCTCTTTGCCCTTGCCATACACCTACCTGAATCCCAACAATGTGGAGAACAGTGTGGCCCTGTAAAATGAGTCGGTCGTATTTATTATGCCCCAAATGGAAGAAATGCACAGATACAGGGAGAGAcaacctggacttgtccaataagaaccacttgttttcattttccattgaagCATGTTTTACAGCCTTTTTCTACGGTGTGCCCTAATAAATGCAACCTAGGTAATTGACTTTGGTTCAATTGTTAGATAAATGTTGCACTTGAACTAGAACTTGAACTGAAACAAAAATATTATAAATAATATTGTACTTAACCCTTCTATTATGTTAGAAAGGGCTATACACGTTTGATGTTCTGATCCAATTTGGAAATGACATTAAGTACAGTTTCCCTTATCAAAATGTGGCTGCGAATGGGACTTTTCCCAGACATTTTCTTCTAAAAACAATGTAGCTGTCCTCCCCTTCACATTTCTCACTGTCAATCAAGAATGATAATTCTTCAGGTTTTACCGGTGAAACATCCATGCAGTATCTGCATACCAACCATTTCATCTCAATCAGTTTGATCTTCTTGAGTTATACAGGGTTTCAAACTATCCTACAGTGTTGTATTTAATGATGTACATTGTGTGAATTGTGGAGCAGATACTGTTAACAAGTTTGCCTAGTGGACCTATTAAGTTTTGGCCACATGAGAGAAAAATGCACTGGTGTTTTTGTCTTACAGTAATGCAATACTATGCTATTATAGTCGGTtcattatgtgatcttgcagacattgattcagctttgatccaTCTTTATTAAACAGCACCATTCGCCAGAGTAGCCTGTTCTCTAAGAGCAGAGCAAGGACTGTAGTAAAGTAGAGAATAAACACATGCACAGAATGTGATGAGCAGAAGCTTCAGGATCTTTAGTCCGGAGAATAAAAGTTCAGGGAAAAGTCAGATTGTCAGCAACTCTGTTTTATTTAACCTGTACTCCACTTCAAATAAATGTTGCTCTGTGCAGGAAGCAGCTTGTTTCTAGGACACACCGTTCAAGAGTTATAAAGGTCAAAGTGCGGGTCAAATTTACCCAGAG

Function

NR:

description
PREDICTED: hydroperoxide isomerase ALOXE3-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K00454 LOX2S; lipoxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989377.1 True 2568 mRNA 0.45 11 70877991 70893771

Neighbor

gene id symbol gene type direction distance location
LOC110492555 LOC106602285 coding upstream 2215 70866534 ~ 70875776 (+)
LOC110491145 LOC106602268 coding upstream 21127 70826283 ~ 70856864 (+)
LOC110534564 LOC106593018 coding upstream 58527 70738824 ~ 70819464 (+)
LOC110497318 LOC106610360 coding upstream 141132 70676444 ~ 70736859 (+)
LOC110534949 dkk2 coding upstream 266743 70592817 ~ 70611248 (+)
LOC110497313 LOC106602288 coding downstream 133795 71027566 ~ 71031915 (+)
LOC110497315 LOC106602282 coding downstream 160395 71054166 ~ 71062433 (+)
LOC110498627 cxxc4 coding downstream 284602 71178373 ~ 71210855 (+)
LOC118936745 cdn2b coding downstream 439766 71333537 ~ 71336033 (+)
LOC110497177 LOC106610368 coding downstream 485676 71379447 ~ 71382000 (+)
G921519 NA non-coding upstream 133696 70743699 ~ 70744295 (+)
G921514 NA non-coding upstream 148762 70728494 ~ 70729229 (+)
G921505 NA non-coding upstream 168941 70708297 ~ 70709050 (+)
G921503 NA non-coding upstream 171725 70706055 ~ 70706266 (+)
G921502 NA non-coding upstream 172457 70705331 ~ 70705534 (+)
G921586 LOC107757009 non-coding downstream 28209 70921980 ~ 70956737 (+)
G921599 NA non-coding downstream 52454 70946225 ~ 70947045 (+)
G921606 NA non-coding downstream 65012 70958783 ~ 70959029 (+)
G921788 NA non-coding downstream 79931 70973702 ~ 70974067 (+)
G921804 NA non-coding downstream 112645 71006416 ~ 71007496 (+)
LOC110497329 lef1 other upstream 404479 70435605 ~ 70490782 (+)
G919839 NA other upstream 1812296 69065442 ~ 69065695 (+)
LOC110534534 LOC106610230 other upstream 2505631 68341142 ~ 68372360 (+)
G919180 NA other upstream 2700938 68176638 ~ 68177053 (+)
G921573 NA other downstream 3973 70897744 ~ 70899209 (+)
G921853 NA other downstream 208449 71102220 ~ 71103281 (+)
G922568 NA other downstream 1210569 72064731 ~ 72104814 (+)
LOC110497298 vps37a other downstream 1752738 72637369 ~ 72648191 (+)

Expression

LOC110514910(LOC106602285) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110514910(LOC106602285) Expression in each Bioproject

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LOC110514910(LOC106602285) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
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Co-expression Network