LOC110497179 (LOC106610325)


Basic Information

Item Value
gene id LOC110497179
gene name LOC106610325
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71406747 ~ 71435265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933850.1
TTAACCTATATTCAACAATAAATATCCATAGTCTGGAATACCTCCCTATGTTGTCAGTCTTGATTGTTTAATAACTGCATTATTGTGCAGGTGGCTGGAGCACCACAAAGGACACATTTGTGTGGGTAGAACCATCATTGGATCTGATAGGACAGGATCTAGTTAGAAAACAAGTGGTTTTTCGTGAGGATTCTGCAGAGTTCAATCAGCTCTGGTATGCTGATAGTAATGACCAAGTGAGAGGAGCCAGCACCCCCCTCTGCTTTAAAACCCCAAAACACAGACTACTGCCTGGAAAACAACCAGTTGGTCATCACAACACAGGAACAATACAATCCACAATATCTCAAATCCAAAGATTGTGTTTTGAAGACCATGCGTGAACTACTTGTCTTTAAAAGGCAGCACTCTCTGTTGGGATTGATGATGTTCCTCACAAGAACATATTAGCTAAAATGATCCATAGGAGAGGATATGTACATGACATGATGTGTGTTTCTGAATCTAGGAACAGGTAGagtaaagtgagagagagaaagaagagctgGTCATGGAGATAGAGCAACTGAAAGAGCAACATGAGACTCTGAGAAGTGTCCTGAAGGAGCAACAGCAAGAGATTGATCGCCTCAAGTCTCTGACATCTATTCATGAAAAATATGAACAAGCATTGATCAAGATCCAACAGCTGAAGAAGGAGCAAGAGGAGTTGAAAGGGAAGGTTGAGGTCCAAAGTGTGGAGATTGCACAGCTGACCCCAAGGCTCAAATCTGAGCAGGAGAACCGCAGACTGAAGGATTACATTCAACTTCTACAGGAGGCTCGGACACAGTTGCACCAGGAGCGGCAGGCTTCCAACAACACCCGCAGACGTGCAGAGAAAGCCGAGAGGGAACTGGAGGAGGTCTATGAGCGCATGGAGAGCACTTCCATGACGTCTGCTCAGATCAAGCAGAAGAGCAGCAAACTAGAGATGCAACTTTTAGAGTTACGCAGAATCATTGAGGAGAAAGAAAACATAGCAGAGATGGCTAAAGTAGAAAATGAGGAGTTGTCCAGAGAAAATCAGGACCTCAGAAGAGATATTGAGAGACTTCGCAAGGAGTTCACTGACCTCCAGACTGTGTCCTTGGAGCCTCCCAGCCCTTATGGCTCTCCAGCTGACCCCACCCCTACTGAGGAGCAGCAGCTAGATGTAATATCTGAGACCCCAGACACTGCTCCAAACTCCGAGGAGTTGTCCTTGCAGTGTCGTCACTGCCATGAGTGGTTCCCTGGCATCACCCAGGATGAGCTGGGGCtgcatgaggacagccacagacTGTGTCCCTACTGCACCCTCATCTGTGACGGAGTGGAGCAGACTATATTTGAAGACCACATCTTCAGCCATGAGGAGTTCACTGACCTCCAGGCTGCTCCAGTGTCCATGGAGCATCCCAGCCCTTATGGCTCTCCAACTGACCTCACCCCCACTGAGGAGCAGCAGCTAGATGTACTATCTGCCTGTCTACTCTCTGGGAACCACTATGAGACCCCAGAAACTGCTCCAAACTCCCAGGAGGAAGAGTTGTCCTTGGAGTGTCGTCACTGCCATGAGTGGTTCCCTGGCATCACCCAGGATGAGCTGAGGCtgcatgaggacagccacagacTGTGCCCCTACTGCACCCTCATCTGTGACGGAGTGGAGCAGACTATATTTGAAGACCACGTCTTCAGCCATGAGGTGTAGAGATGCCACATCCTCACAACCATTTATACAGAGAGTTGCTGAGAGTAGACTAAATCTGATACTCTATGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCACCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGATACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGAAACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATAATACTCTACGGATGATGCTCCTTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATAATACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGAAACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGAAACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTCATACTCTACGGATGATGTTCCTAACAACCCATC
>TU1048911
cacacaatataccccataatgtcaaagtaacTTGTTTAACAAATtagttaaaaatgaaaagctgaaatgttttgagtcagtaagtattcaagccctttgttatgtcaagcctaaataagttcaggagtaaaaatgtgctttacaAGTCACGTaaaaagttgcatggactcactctgcgtgcaataacagtgtttaacatgatttttgaatgactacctcatctctgtaccccacacatacaagtatatatgtaaggtccctcagtcaagcagtgaatttcaaacaggctcaaccacaaagaccagggaagtttttcaatgcctcgcaacgAAGGGCACCcactggtagatgggtaaaaagaaaagcagacattgaatatccctttgtgcatgttgaagttattaattacactttggatgcatCCAGTCACTagaaagatacaggcatcctttctatctcagttaccggagaggaaggaaactgctcagggatctcaccatgaggccaatggtgactttgatATTATTACCACTTAAGACCTGTACCTGTCCCATAGTTGTCCTTGCAGTGTCGTCACTGCCATGAGTGGTTCCCTGGCATCACCCAGGATGAGCTGGGGCtgcatgaggacagccacagacTGTGTCCCTACTGCACCCTCATCTGTGACGGAGTGGAGCAGACTATATTTGAAGACCACATCTTCAGCCATGAGGTGTAGAGATGCCACATCCTCACAACCATTTATACAGAGAGTTGCTGAGAGTAGACTAAATCTGATACTCTATGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCACCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGATACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGAAACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCTCCTAACAACCCATCTAGGACAttataaaacaaaaatgtatatccACCTGTTCATAAATGTTTTCTTGTCTAAGACTGTCCATTCTTAATTTCAGTCTTAGTAGAGATTTGCCTCCATTGCTGGTCAATAGGAATGTATTGCTTTGCTTTTTAATGGTTTCTCTATTGTTATAAACTACGTTTACTTTGGCTTATTGCACTATACTGACTCTCTCCCCTTAAACCTGCTGCTAATATATGTGTTGCATATTAGAGTCAAATGATTCATGCCCAAATGATTCATGCCCAAATGATCATGCCCAAATGATTCATGCCCAAATTATTCATGCCCAAATTATTCATACCCAAATGATTCATGCCCAAATGATTCATGCCCAAATGATTCATGCCCAAATGATTCATACCCAAATGTTTAACGGTCAAATGATTGAAAGTTGAAATGGGATTAATGTGGGAagaattttgttgttgttatattcACAGTTGTCTTGACATGAAATAAACATTGTTTTGT

Function

NR:

description
calcium-binding and coiled-coil domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933850.1 False 2619 mRNA 0.46 12 71407276 71435265
TU1048911 True 1641 lncRNA 0.40 4 71406747 71410012

Neighbor

gene id symbol gene type direction distance location
si:ch211-108d22.2 LOC106610364 coding downstream 2502 71398990 ~ 71404774 (-)
LOC110518698 LOC106591917 coding downstream 8379 71387742 ~ 71398897 (-)
LOC110497174 LOC106610327 coding downstream 30117 71375155 ~ 71377159 (-)
LOC110497184 LOC106610366 coding downstream 34997 71337781 ~ 71372279 (-)
LOC110533203 LOC106610354 coding downstream 285523 71064699 ~ 71121753 (-)
LOC110497178 LOC106610310 coding upstream 3194 71438459 ~ 71440406 (-)
LOC110497169 LOC106610324 coding upstream 7143 71442408 ~ 71446983 (-)
LOC110497182 LOC106610322 coding upstream 12580 71447845 ~ 71450759 (-)
LOC110534568 NA coding upstream 37181 71472446 ~ 71476198 (-)
LOC110515428 mxd4 coding upstream 41884 71477149 ~ 71516366 (-)
G922285 NA non-coding downstream 102582 71303881 ~ 71304694 (-)
G922280 NA non-coding downstream 113212 71290083 ~ 71294064 (-)
G922267 NA non-coding downstream 129357 71277685 ~ 71277919 (-)
G922264 NA non-coding downstream 133069 71273802 ~ 71274207 (-)
G922259 NA non-coding downstream 143335 71262924 ~ 71263941 (-)
G922329 NA non-coding upstream 63660 71498925 ~ 71499755 (-)
G922333 NA non-coding upstream 87039 71522304 ~ 71522614 (-)
G922341 NA non-coding upstream 104673 71539938 ~ 71542905 (-)
G922374 NA non-coding upstream 176854 71612119 ~ 71722343 (-)
G922376 NA non-coding upstream 181500 71616765 ~ 71618259 (-)
G921899 NA other downstream 390347 71016496 ~ 71016929 (-)
G921677 LOC106602265 other downstream 590974 70746687 ~ 70816302 (-)
G921673 LOC106602265 other downstream 665957 70738540 ~ 70798813 (-)
G921389 papss1 other downstream 877814 70527538 ~ 70533352 (-)
LOC118936934 LOC106597769 other upstream 160225 71595152 ~ 71597145 (-)
LOC118936746 LOC106602209 other upstream 226510 71658344 ~ 71665901 (-)
LOC110534950 LOC106595337 other upstream 310550 71744768 ~ 71752698 (-)
LOC110514144 LOC106602209 other upstream 327196 71747636 ~ 71765505 (-)
G923192 LOC106610383 other upstream 1470312 72905577 ~ 72928468 (-)
LOC110497173 LOC100196683 coding upstream 17997 71428009 ~ 71431719 (-)

Expression


Co-expression Network