LOC110497173 (LOC100196683)


Basic Information

Item Value
gene id LOC110497173
gene name LOC100196683
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71428009 ~ 71431719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573147.2
gacgggtcgccactgcaaGACTAGACCAGGAAACGAAACCTAAATAGGTAAGATTGGCCTGCAGTCAGGAATTGAAACCTAGGCGCTAGGTTTCCTAAGCATACGGAGTATTCCTGCATTTGTCTTGCAGCAGCAGCTCATttcagcagaggtgtatttaacaGCAGTTTGGTTACTATGGATGTTAACCCTGATTCCCCATACTACATCAACTTGCTTGACAGCAAGTCTCATCCTGAAGATCACAGAGAATATGTGATGTTTCATGGCTGCTCAAAAGAGGGCGCAGAgttgattaagagggacggcttCAAACCATCAAGTGCAGATAGAATGCTTGGTGCTGGTGTTTATGTTAGTCGGGACATCCGAAAAGCCTGTAAATACCCTCTTGATGTTCCTGACTCTGAGAAAAGAGTACTAAAAGTCAGAGTGAATGTCGGCAGGGTTAAGGTCATAGACAGGCAGAACCACACCATGCAGAAGACATGGCACACTGTGCATGGCTTTGACACtgcctgggttcctcctaatgttGGCATGGTACTGTGtaaccaggaggaggactgtgtctATGACCCAAAGAGAATCAAAGTAATCGAGGTCATGAAGGTTACTGAAGATAACTTATCTCAGTATGATCATCTACAGAGTGGAGTCTCCCCTGAGGACAGCCACGTCTATGTGATGTATCATGGAACATCAAAACAGATTGCTGTGGATATACAGAGAAATGGATTCAAACCTTCCAAAGATGGCATGCTTGGTGCCGGTGTCTACCTCAGTCGAGACATTCGAAAAGTCATTAGATACCCCCTCAACACCCCATTGATGACCATTCCTGACTCTGATAGGATGGTTCTGAAAGTAAAGGTGGATGTAGGCAGAGTTAAGGTGATAAAAAGGCAGAGACACCCCATGCAGAAGACCTGGCACACTGAGCATGGCTTTGACACTGCCTGGGTACCACCTAATGTTGGCATGGTGCCGAGCAACCAAGAGGAGGACTGTGTCTACGACCCAAAGAGAATCAAAGTGTTGGCAATGCTGAAAGTGCCCAACTTAAAGAATGTAAACCCATGGTTGAACAATCCACTGCAAAACTGATGGTGTTCTGCATTCAGAGGGAGCATCAACTCATGGTCATCAGAAGAGGATGGTGTTGGGTTCACCTAGGGGTCATGATTGGGGCTGTACCAAATGATTGATGTATTACAATAATTGATTATGCtaatgttgtattaatagaaggggaggggttataagacccctccctctttacatttatagggtcctagactacagattaacaatatatTTACACATTGAGATTTTAATGCTCTctctcttatttatttatttatatatacatataaagagACCCCTCTGAGACAAaactctgcaggggagtgtaGGAGATAAGACTACACAGACATTCTACTATAAATCAACTTGGACATATTTACTGCTAAGCTTTTAGATAACACACTAAAAGCATTGTTTATATAGCTTTGTAGGCATGGTTTTGGTCTCATGAGTAAAAGGTAATGACGTAGGCAGTGACATCACTAAAGGCTGGACTTCGGGTTTGATAAAGTAACATGGGACCTTTTTGTTTGATGCAGAACTTACTGGGAAACATGCGTGCTATGTTCCTGATTGTCAACTtatgtctgcaattgcattaataaaggtttttgaatgattttaatttaaa

Function

NR:

description
uncharacterized protein LOC110497173

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573147.2 True 1717 mRNA 0.43 4 71428009 71431719

Neighbor

gene id symbol gene type direction distance location
si:ch211-108d22.2 LOC106610364 coding downstream 23235 71398990 ~ 71404774 (-)
LOC110518698 LOC106591917 coding downstream 29112 71387742 ~ 71398897 (-)
LOC110497174 LOC106610327 coding downstream 50850 71375155 ~ 71377159 (-)
LOC110497184 LOC106610366 coding downstream 55730 71337781 ~ 71372279 (-)
LOC110533203 LOC106610354 coding downstream 306256 71064699 ~ 71121753 (-)
LOC110497178 LOC106610310 coding upstream 6740 71438459 ~ 71440406 (-)
LOC110497169 LOC106610324 coding upstream 10689 71442408 ~ 71446983 (-)
LOC110497182 LOC106610322 coding upstream 16126 71447845 ~ 71450759 (-)
LOC110534568 NA coding upstream 40727 71472446 ~ 71476198 (-)
LOC110515428 mxd4 coding upstream 45430 71477149 ~ 71516366 (-)
LOC110497179 LOC106610325 non-coding downstream 17997 71406747 ~ 71435265 (-)
G922285 NA non-coding downstream 123315 71303881 ~ 71304694 (-)
G922280 NA non-coding downstream 133945 71290083 ~ 71294064 (-)
G922267 NA non-coding downstream 150090 71277685 ~ 71277919 (-)
G922264 NA non-coding downstream 153802 71273802 ~ 71274207 (-)
G922329 NA non-coding upstream 67206 71498925 ~ 71499755 (-)
G922333 NA non-coding upstream 90585 71522304 ~ 71522614 (-)
G922341 NA non-coding upstream 108219 71539938 ~ 71542905 (-)
G922374 NA non-coding upstream 180400 71612119 ~ 71722343 (-)
G922376 NA non-coding upstream 185046 71616765 ~ 71618259 (-)
G921899 NA other downstream 411080 71016496 ~ 71016929 (-)
G921677 LOC106602265 other downstream 611707 70746687 ~ 70816302 (-)
G921673 LOC106602265 other downstream 686690 70738540 ~ 70798813 (-)
G921389 papss1 other downstream 898547 70527538 ~ 70533352 (-)
LOC118936934 LOC106597769 other upstream 163771 71595152 ~ 71597145 (-)
LOC118936746 LOC106602209 other upstream 230056 71658344 ~ 71665901 (-)
LOC110534950 LOC106595337 other upstream 314096 71744768 ~ 71752698 (-)
LOC110514144 LOC106602209 other upstream 330742 71747636 ~ 71765505 (-)
G923192 LOC106610383 other upstream 1473858 72905577 ~ 72928468 (-)

Expression


Co-expression Network