LOC110497178 (LOC106610310)


Basic Information

Item Value
gene id LOC110497178
gene name LOC106610310
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71438459 ~ 71440406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573154.2
CTAAATAGGTAAGATTGTCCTGCAGTCAGGAATTGAAACCTAAGCGCTAGGTTTCCTAAGCATACGGAGTATTCCTGCATTTGTCTTGCAGCAGCAGCTCATttcagcagaggtgtatttaacaACGGTTTGGTTACTATGGATGTTAACCCTGATTCCCCATACTACATCAACTTGCTTGACAGCAAGACTCATCCTGAAGATCACAGAGAATATGTGATGTTTCATGGCTGCTCAAAAGAGGGCGCAGAGTTTATTAAAAGGGAAGGTTTCAAACCATCAAGAGCCGATATCAGCATGCTTGGTGCTGGTGTTTATGTTAGTCGGGACATCCGAAAAGCCTGTAAATACCCTCTTGATGTTCCTGACTCTGAGAAAAGAGTACTAAAAATCAGGGTGGATGTCGGCAGGGTTAAGGTCATAGACAGGCAGAACCACCCCATGCAGAAGACATGGCACACTGTGCATGGCTTTGACACTGCCTGGGTTCCCCCTAATGTTGGCATGGTGGCGAGCAACCAACAGGAGAACTGTGTCTACGACCCAAAGAGAATCAAAGTCATCGAGGTCATGAAGGTTACCGAAGAGAACTTATCTCAGTATGATCATCTTCAGAGTGGAGTCTCGCCTGAGGACAGCCACGTCTACGTGATGTACCATGGAACATCAAAACAGGCTGCAGTAGATATACAGAGAAATGGCTTCACACCATCTAAAGTTGGGATGCTTGGTGCAGGTGTCTACCTCAGTCGAGACATCCGAAAAGTCATTAGATACCCCCTTGGTTCTTCTGACTCAAACAGGATGGTTCTGAAAGTGAAGGTGAATGTTGGCAGAGTTAAAGTCATCAACAAAAAGGGTCACGACATGCAATACAACTGGCACACTCATGGCTTTGACACTGCCTGGGTTCCACCTGGTGTTGGCATGGTACCAAGCAACCAAGAGGAGGACTGTGTCTACGACCCAAAGAGAATCAAAGTGATGGCAATGCTGGATGTCGCCAATTTAAAAAAGGTAAACCCATGGTTAAACATTGTGTAGTGGAACTGATGAACTCGAACTCTGCATTCAGTGGGAGCATCCAGCATCACCTCATGGTCACCAGAAGAGGATGGTTAGAATCAGACGGTCCCACATGATACAGCTCATAGGAAGTAGAAGCTGATGATTTGACATGGCAATCTATATGCAATCAATCATATAACCTTATCATATCAAATATTTTCGAAATATAATCAATCATATTTAGTTGATGTCAATAATACATGTGTATCAATGATcatatgtaaaaataaaataaaaacgtttTTCTTCCTGATATACATCTCAAATAAATATGTAAAAGTTCCC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573154.2 True 1353 mRNA 0.43 4 71438459 71440406

Neighbor

gene id symbol gene type direction distance location
LOC110497179 LOC106610325 coding downstream 3194 71406747 ~ 71435265 (-)
LOC110497173 LOC100196683 coding downstream 6740 71428009 ~ 71431719 (-)
si:ch211-108d22.2 LOC106610364 coding downstream 33685 71398990 ~ 71404774 (-)
LOC110518698 LOC106591917 coding downstream 39562 71387742 ~ 71398897 (-)
LOC110497174 LOC106610327 coding downstream 61300 71375155 ~ 71377159 (-)
LOC110497169 LOC106610324 coding upstream 2002 71442408 ~ 71446983 (-)
LOC110497182 LOC106610322 coding upstream 7439 71447845 ~ 71450759 (-)
LOC110534568 NA coding upstream 32040 71472446 ~ 71476198 (-)
LOC110515428 mxd4 coding upstream 36743 71477149 ~ 71516366 (-)
LOC118936934 LOC106597769 coding upstream 154746 71595152 ~ 71597145 (-)
G922285 NA non-coding downstream 133765 71303881 ~ 71304694 (-)
G922280 NA non-coding downstream 144395 71290083 ~ 71294064 (-)
G922267 NA non-coding downstream 160540 71277685 ~ 71277919 (-)
G922264 NA non-coding downstream 164252 71273802 ~ 71274207 (-)
G922329 NA non-coding upstream 58519 71498925 ~ 71499755 (-)
G922333 NA non-coding upstream 81898 71522304 ~ 71522614 (-)
G922341 NA non-coding upstream 99532 71539938 ~ 71542905 (-)
G922374 NA non-coding upstream 171713 71612119 ~ 71722343 (-)
G922376 NA non-coding upstream 176359 71616765 ~ 71618259 (-)
LOC110533203 LOC106610354 other downstream 356947 71064699 ~ 71121753 (-)
G921899 NA other downstream 421530 71016496 ~ 71016929 (-)
G921677 LOC106602265 other downstream 622157 70746687 ~ 70816302 (-)
G921673 LOC106602265 other downstream 697140 70738540 ~ 70798813 (-)
G921389 papss1 other downstream 908997 70527538 ~ 70533352 (-)
LOC118936746 LOC106602209 other upstream 221369 71658344 ~ 71665901 (-)
LOC110534950 LOC106595337 other upstream 305409 71744768 ~ 71752698 (-)
LOC110514144 LOC106602209 other upstream 322055 71747636 ~ 71765505 (-)
G923192 LOC106610383 other upstream 1465171 72905577 ~ 72928468 (-)

Expression


Co-expression Network