LOC110497169 (LOC106610324)


Basic Information

Item Value
gene id LOC110497169
gene name LOC106610324
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71442408 ~ 71446983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573142.2
CCTttgcgtttaaaaaaaaaaaatgtagcatTACATCACGGTATGAAACAGGAGGCCAACTCCAAAGAGTGTGGTAAACAACTAAATTAATTTACTTCTCTTTAGTACATATGGAAATAGTGAAATATGAAAAGATAATGAGAGGTCTTGAGTGTTGTCGCCGACAGGATTCCTAGACATTTGCCTCGGATCCCCGGCTTTTTTTTTGACTATCACCATGGCAGCAGCAAAGATGACCTTACGGCTACGCAAGAAGAGTGCCCTGGACAAGTCCTCTGAGGTTTTGTCTGCCGAGGCGTCTCCAGACTCTAAGTGCCCCATCTGTCTGGACCGATTCAACAACATGGCCTACCTCGATCTCTGCTTGCACAAGTTCTGCTTCCGCTGCATCCACGAGTGGTCCAAGAACAAAGCTGAGTGCCCGCTATGCAAGCAGCCATTCAACTCTATCTATCACAGTATACAATCAGAGAAGGACTTCAAGAAGTATGACCTGCGGCCCACGGAGAACGGTTCCTTTGGGAGTTTCGCAGGGGAACGGTTCCGCTACCGCACCACGCTGACGGGGGCGCGTCGGCAGGACCAGAGAAGAACATCCCCTCCCCCCGACAACGGGGTCATGTTCGAGGCCCTAACGGGGGCTTCCCCCCCTCCTCGACAGGACCGAGGCCTCCGCCGCATGATGGCGCGCCTGGCGGCCAGGAGGCGGGCAGAAAGCGAGGGCCGGACCGTGCGCAGCCTCCGTGAGCAGGAGATGATCAAGTTCAGACGGGCGCTCTACCGGCGAGGGGTGCGAGTGCGGAGCGTGCGAGACGGTGGCCGTTCCCGGGACATCTCGGCGGAGTTCTTTCAGAAGAACCCGGCCTGCCTGCACCGCCTGTTGCCCTGGCTGAAGAGAGAGCTGGTGGTGCTGTACGGCGCTCACGGCTCCCTGGTCAACATCGTGCAGCACATTATCATGTCCCGCATCACCCGCTATGACATGGAGGACCGGGCCATCCACGAGGAGCTGCAGCCTTTCCTCCAGGCCCGCACCGATCACTTCCTGCATGAGTTTGTCAACTTCGCCCGAGCACCCTTCAACATGGAGGCCTACGACCAGCATGCCGTCTACGACTGCCCTGCGCCGTCCTCGGACGAGGGCAGCAGCTCCAACTCCTCGGTGATTGCCATCTccgaggatgaggaggagggcgaTTCTGTGGAGCTGGACCCCATGTCCGGGGGCGCCCTGAGCCAGTCAACATGGGACGACGAGACACCCGGACCTTCGTACTCCACAACAGAACCCACCAGGGCCCTGCTGCTATCCATCAGAGACTCTGACTCAGAGAGCAGTGTGGGGGAGGAGTGCGGAGCAGTGTTACAGCCAAAGACCCCTCGCCTGACTGCGGACTCTGCTTGGGTGAAAACCGACAAGGACGGACAGGCGTGTACCTCCTCTGGCGATGAGGATTGCATCATCGTGGGCTTTGTAAAACCCCTTGCTGAAAGGACCCCGGAGCTGGTCAAGCTGTCCTCTGACTCAGAGGAGTCTGTTCTGGAGGAGATCAAAGATGAAGTGCCCAGGCTGCTTCAACACATCCGCTTCACCAGCCTTAGCCCCGCCTCCTCTCAAGGCCAATGTCCTGGGAAGGCAGAGGGGGTGGAAAGGAAGCAAGATGTATCGTGCTCCAAGGAGAGACGTAACACCTCACCCTCAATTAGATGTGAGTCATCATCTAGTAAGTCAGCAAGCAAAAACAGAGGACAAACTGAGAAAGACGGCAGGAGATGTCACAGTCGAGATAGCTCTAGAGAGAGGCCACGGTCGAGAAGCAGAGACCGGGGGAGGAGGTCCAGGAGCGCCGACCGCAGCCGCTCGACCAAGAGCCCGGCTATCTCCATCAACAGCGACAGCACTCTGTCCAGAGGCAGGAGGCAGTCACGCTCCCAAAGCCGCGACCGCTCCCACACTAAATGGGAGAAGACGAGGGACAATAAAGATAGCAGCCGATCAGGCCGCAGCCACGACTCATCGTCACACTCCTATCACTGGCACTACTACAGccgggagagtgagagggacagcAGTGCCATGCTCTACACAGAGAGGAGGTCCTACTACTCCAGCTCACACAGGAACATCGATTGCAGGTCCCCGAGCCAGAGTCCTGATTCCCACCGGCGGGATAAGAGGCGCTCCAGAAGTCGTTCCAGCACCTGTTCGCCGTCCGGCGCTCACAGGAAGTCTCGTCACGAGAAGCCCAGCGGGAAGAGAAAGTACAAATCGAGACACCTGGAGGAACCTTCCCCCAAAGACCAGTCCTCCATAGCCCTCGACGagcctccctcctccaccacctcgtCCTATGTGAAAGACAAGAAGAAGAGCAAAGAGAAGCGTCACAGGAAGTCCAAGGAGAAGTCTGGGGGGAAGAGGAGCAGGAGCCTCAGCGTGGAGATCATCTTTGAGGGCAGCTCCTCAGAGCAAACCAGGAAGcaccagaagaagaagaagaagcacaaGAAGAAGGGCAAGAGGCACAGGAGCAAAGAGCGCACAGGGTCCAGGAAACACTCGCCCACTGTCATTACCATAGACAGCGACAGTGACCAACATACTGCCGAAGGCGCTAACGATGCTAACCACACCTGCCCGGTAAGCAGCAGCACAAGCAACAGCGTGCTAGCGCCTagcacaaccaccaccacagGCAACCCTGCAGACTCTGGCCTGCTGGAGTCCATGTTACAAGACTGGGAACAGCAGATTCCACCTGTGGGTCTGGACAGTGGAGTGCTGGAGGCCAAGCCTCCTATAAATGTTGCTGCTGCTTctgacacacccacacagagtgaGGGGGTTCTGTCCCAATCTGCCTCTGCGGATGAGGCAAACTCTCATAGCCCTTCAAATGacaacacaagtcattttttggaAGAATCATAATGCTGGCCTCGGTGGGTAGGAAGACATTTAATTTACCTTTAAAAGTTAGTTTTACACCTCACTATGTAGGATGTTATATGTACTGTTCTGCCAAAAGGTGCTCTTTCATTTGGGATGTGCCACTTTGCTGTATGAGGTTAAAAAAAAAGGGGGGTCAAAGATTGGGTTTTATttgtcttatttacagtgactgtCTGTAAGGCCTACATTTAAAAAGTATTTGTATAAAATACTTCAACTAATTTCTTATCAGTCATTCATTTCTATGCATCATTCTCAGGGATAACATGGGCAATAAAGCTGATGTAGCTTGTACCGTTGTGTTGAAACCAAACACCTTGTCTACCTGCTGTTCTTGTAATCTGATGGAAAACTGCTCTTAATACTAGCCAATAAATCAATATGGGAATGGGAAAGACTGTTGTTGTAACTGTGGAGTTGTAAATAGTAATAAATGTTTCAAAACTGAAATCAACAGCTGATATGACCTCCTGAATAAGTCAGCATTGGCCAGTGGCTCGTCGTTGGAGGCCACATATGTAATGGTTACTGCCTGAGTGGGTATCCTTTCATGTGGATGGCATGAGAGTTCTAGAACCTTACAGATGCTACTACGATTAAGATGCTAACACGTTACTGAAGCTGATTCTAGTGTGATAAAGGAACATCAACTTGCCAGTGGTGCAATAAACATTTTGAAAGTAAGAAGTATCATAATGTCCCCATTAGATTAGGCTTCTTATCTGAGTGGGCACGGTTGCTTTTCATTTGAGATTTGATAAAAATGATGCTACGCTGTTGGGACAAGACAagagtggcgattttagcatgtaaatcttggtggggcaaactcaaaatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacat

Function

NR:

description
E3 ubiquitin-protein ligase Topors-like

GO: NA

KEGG:

id description
K10631 TOPORS; E3 ubiquitin-protein ligase Topors

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573142.2 True 3863 mRNA 0.52 2 71442408 71446983

Neighbor

gene id symbol gene type direction distance location
LOC110497178 LOC106610310 coding downstream 2002 71438459 ~ 71440406 (-)
LOC110497179 LOC106610325 coding downstream 7143 71406747 ~ 71435265 (-)
LOC110497173 LOC100196683 coding downstream 10689 71428009 ~ 71431719 (-)
si:ch211-108d22.2 LOC106610364 coding downstream 37634 71398990 ~ 71404774 (-)
LOC110518698 LOC106591917 coding downstream 43511 71387742 ~ 71398897 (-)
LOC110497182 LOC106610322 coding upstream 862 71447845 ~ 71450759 (-)
LOC110534568 NA coding upstream 25463 71472446 ~ 71476198 (-)
LOC110515428 mxd4 coding upstream 30166 71477149 ~ 71516366 (-)
LOC118936934 LOC106597769 coding upstream 148169 71595152 ~ 71597145 (-)
LOC118966646 LOC106595337 coding upstream 150232 71597215 ~ 71602590 (-)
G922285 NA non-coding downstream 137714 71303881 ~ 71304694 (-)
G922280 NA non-coding downstream 148344 71290083 ~ 71294064 (-)
G922267 NA non-coding downstream 164489 71277685 ~ 71277919 (-)
G922264 NA non-coding downstream 168201 71273802 ~ 71274207 (-)
G922329 NA non-coding upstream 51942 71498925 ~ 71499755 (-)
G922333 NA non-coding upstream 75321 71522304 ~ 71522614 (-)
G922341 NA non-coding upstream 92955 71539938 ~ 71542905 (-)
G922374 NA non-coding upstream 165136 71612119 ~ 71722343 (-)
G922376 NA non-coding upstream 169782 71616765 ~ 71618259 (-)
LOC110533203 LOC106610354 other downstream 360896 71064699 ~ 71121753 (-)
G921899 NA other downstream 425479 71016496 ~ 71016929 (-)
G921677 LOC106602265 other downstream 626106 70746687 ~ 70816302 (-)
G921673 LOC106602265 other downstream 701089 70738540 ~ 70798813 (-)
G921389 papss1 other downstream 912946 70527538 ~ 70533352 (-)
LOC118936746 LOC106602209 other upstream 214792 71658344 ~ 71665901 (-)
LOC110534950 LOC106595337 other upstream 298832 71744768 ~ 71752698 (-)
LOC110514144 LOC106602209 other upstream 315478 71747636 ~ 71765505 (-)
G923192 LOC106610383 other upstream 1458594 72905577 ~ 72928468 (-)

Expression


Co-expression Network