LOC118936748 (LOC106602203)


Basic Information

Item Value
gene id LOC118936748
gene name LOC106602203
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71728831 ~ 71734927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933866.1
ATGCCAGCAACCTTGTGTTATGCCTTCCATTCAACACCAATTTATCACCTAGCAAGTGTATTTAACACGCACTGGGCACTGTAAGCTCTGCCCACTGACCATTGAGCTTTAATTGAACCAATCACATTCATTATGTCCTTGAGACAGAGCTGCCCTCAGGGCAAGATTGAATACGGAAAACTGTCCCTAACCAATCTGGATTGTTGTTTGAGGTTTAGGCTAAATCTCTACCACCTGTTCACATTCTTTTAAACCAACCCTTTGTCCATCTGCTGGTGAACAAGAGAAAAAGCATTTAGCATTTAAATAAACCGATAACCAAACCAAAAACAACATGGAAGCTATCAAAAAACTATGAAGATGAAGATGAAGGCActtaaaatgcctttattgtgGTCGTACGTTTAATGAAACAACATAcaaaaaatgaatgtaaaaagAAACAAGAATACAATGGAGCATATTATCTACAATATTGTATGTATACTGCATAACTTTGCTCTTCAGTAAAACAGATTTGTTCATTGAacaatatattttaaaatgttatagATTGGGTTGCCAGGTGGTGGTGTCATACATGACCGATGACATCACAATGGTCTTAAAGCCAATTTGAACAATGGGTTAATGTGGAAATGTATCAGTCTTCATTGGTTATCGACATGGCTTGTTTCTGCTGGTGCAAAAAGGTATGAAATCAGGTCATTTAATCAATGAACAACTACTATAATTCTGGAGTAGTATGTTTCTCTTAAACCTAGTGGGAAGAATAAAAGTAAAATTACATTCTGATTGACGAATACGTAAAAAGTGTACATGAAATGTACATGAAGTTCTGCTATTGCAAATGTCACTCAATGTAACCTGTCTATACTGTGTTATTTGAGGTTTAGGATAGATACCTATGATTCTCCATTTAGGCCAACCTCTTCCTACTCTTATGACCCCCCTCTTCCATTGGCTGGGGATCTGGGGGGGAAAGTATTTAGCACTATCACATTTTCTTGTCAACAGAAAAAACGTCAGAAAGCAAATTCAGTTGATGTGGAGCAGAAGACAAGAAAGAAGAAGGATAGGGGcacttcatccccctctccaatTCCATCTGACCGTTCTGAACGGAATGGCTCCGCTACCTCTGACCCCTCACCCTCTGACaaactctcctccctccatccacctccctctcctgttAAATGTTCCTCTCAGCCTTGCTCTCCTGCTGAACAACCCTCTGTACCCCGGTCACCTGCCAAAAACCCTTCCCCAGTTAAATTCTCTCCAGTGGTGTCCCAGCCTAGTTCTCCCTCTCCTACCAACCCTCTGGACCGTCATGGAGACACCAGTCAGGAGGGCACAACAGTCAGacTTCTGTCTCTTCAGGAACACTCTAGTCCAATGCCCCAGAGACCAGTCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAGGGTCAGAAGAGACCCAGGGGGCCAGAGGAGAACGGGGGGGAACTGGTCAACATGGAACTTCTTGGGTTGCCTAACATTGGCAACACTTGCTTCCTTAACGCCACCCTGCAGTGCCTCCTGGTCCTGCCTTCCTTCTCAAAGGAAATCCTGCACCAGGAACAACTCTGgagctcctcccccttctccaacCTGCTCAGGTGTCTGTCTGATGTGCACCGTTCGGGTTTACCTGACAGTATGGCAAACCAGGCCTCAAAAGCAGACCTCATGTGGAAGGTCAAGTACTCCTTGTCGGGATACGATTTGAAGTATCTGGGGGACACGCAACAGGACGCACACGAGTTACTCGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACACTCGGGATGAACTATACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCACATGTACCAGCTGTGGGCGCGAGTCGTCCACCAGAGAGGACTACAACCACCTCTCATTGGACATCAGCCCTGAGCGCACCTTGCTGAACAGCCTAGCACTCACTTTCAAAAGTGAACAGGTTGAATTCACATGTGAGGGCTGTAAAGGCCTCCACGCCTCAAAGGTGGAGCAGTTCCACACACTGCCTCTTGTGCTGGTTCTGCATCTGAAGAGGTTTGGAGGACCTGGGGGGTTGGAGAAGCTGGAGGCTCCTCTTTTGTTTCCTTCGGAGCTGAGGCTCTCCACCCTCTGTGGGGACATGGTGCCACACCTGCACAGTGCCAGCCCACAGGCCCTCACCAACCAGGCCCCCAGCATCCAGGGGTCCATCCCCCAGACCCTCGCCAGCCAAGTCTCCAGACCACCTGGAGAGGCCAAAGACAGCGCCCTCTGCTGTTCAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCACTACATTAGTGACATATTGCATGCCAGTGGAAACTGGTTCTGCTGTAACGACAGCCAGGTGTCAATGTCCAATGAAGCCACTGTGCTGAGGACCAGAGCCCGGAGTGCCTACATGCTCTTCTATATGTTCAGGTACTGCTTACTCTCGCCATCTATATTCTTGTGTTGCTATTTATGTGTACGGTTCCTTTCACCCTACCGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAACAGGGCCACCAGCATCAGCCCCAGACTAAACAGGGGCAGCACCTGGACCAGCCTCCAAACACTCAGACCTGTCTCAACAGGGGTGGTACCAGGCCCAGCCTCAaaacccccagcccagcctcaacCCTCACACACCTGCCTCGAAAGGGGTAGCACTTGGCCCAACATCAACAACCCCGAGCCCAGCCACAACAGGGGCAGCACTGGGCCCAACATCAACACACCCAGCCCAGCCTCAACATGGGAAGAACCAGGCCCAGTCTCAACATGGGCAGAACAAGACCCAGCCCCAACACCCTCAGACTTGCCTCAATGATGTGATTGAGATGCTTAATATCAACGATGTTTACAATGACGCCACACCCTTACTGTACCATTGTGACCTGTCACTATTAAAGGCTGTGTGACG
>TU1049070
TCTGTCtgttcatctctcttcctctctgtttctgggCAGTGTGCTGGTTCTGCATCTGAAGAGGTTTGGAGGACCTGGGGGGTTGGAGAAGCTGGAGGCTCCTCTTTTGTTTCCTTCGGAGCTGAGGCTCTCCACCCTCTGTGGGGACATGGTGCCACACCTGCACAGTGCCAGCCCACAGGCCCTCACCAACCAGGCCCCCAGCATCCAGGGGTCCATCCCCCAGACCCTCGCCAGCCAAGTCTCCAGACCACCTGGAGAGGCCAAAGACAGCGCCCTCTGCTGTTCAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCACTACATTAGTGACATATTGCATGCCAGTGGAAACTGGTTCTGCTGTAACGACAGCCAGGTGTCAATGTCCAATGAAGCCACTGTGCTGAGGACCAGAGCCCGGAGTGCCTACATGCTCTTCTATATGTTCAGGTACTGCTTACTCTCGCCATCTATATTCTTGTGTTGCTATTTATGTGTACGG

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 37-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933866.1 False 3135 mRNA 0.49 10 71728831 71734927
TU1049070 True 560 lncRNA 0.55 3 71729294 71731134

Neighbor

gene id symbol gene type direction distance location
LOC118936746 LOC106602209 coding downstream 62930 71658344 ~ 71665901 (-)
LOC118966646 LOC106595337 coding downstream 126241 71597215 ~ 71602590 (-)
LOC118936934 LOC106597769 coding downstream 131807 71595152 ~ 71597145 (-)
LOC110515428 mxd4 coding downstream 212465 71477149 ~ 71516366 (-)
LOC110534568 NA coding downstream 252633 71472446 ~ 71476198 (-)
LOC110534950 LOC106595337 coding upstream 9841 71744768 ~ 71752698 (-)
LOC110534519 NA coding upstream 24678 71759605 ~ 71761025 (-)
LOC110514144 LOC106602209 coding upstream 26492 71747636 ~ 71765505 (-)
LOC118966648 LOC106610349 coding upstream 45658 71780585 ~ 71784330 (-)
LOC110534569 sgcz coding upstream 269896 72004823 ~ 72351589 (-)
G922374 NA non-coding downstream 6488 71612119 ~ 71722343 (-)
G922411 NA non-coding downstream 17791 71710298 ~ 71711040 (-)
G922376 NA non-coding downstream 110572 71616765 ~ 71618259 (-)
G922341 NA non-coding downstream 185926 71539938 ~ 71542905 (-)
G922407 NA non-coding upstream 61268 71796195 ~ 71849264 (-)
G922404 NA non-coding upstream 99806 71834733 ~ 71836224 (-)
G922488 NA non-coding upstream 186554 71921481 ~ 71921718 (-)
LOC110533203 LOC106610354 other downstream 647319 71064699 ~ 71121753 (-)
G921899 NA other downstream 711902 71016496 ~ 71016929 (-)
G921677 LOC106602265 other downstream 912529 70746687 ~ 70816302 (-)
G923192 LOC106610383 other upstream 1170650 72905577 ~ 72928468 (-)
G924041 NA other upstream 1895215 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 3182250 74890707 ~ 74932952 (-)

Expression


Co-expression Network