LOC118966648 (LOC106610349)


Basic Information

Item Value
gene id LOC118966648
gene name LOC106610349
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71780585 ~ 71784330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989383.1
acacatacacacacacacacacacaaacaaataacacGCACAATACACTACAGGTGAGATAACCTGTAGTACTCTAGCTTTATTTGTCTCAATCCTGGATGAAACAGTAAAACACATTACCAAAGATCTTTAATCATTTGTGATTCAGTACATGTTCAGTGGTGGGAGAGACCCTCTGGAGttgctgcagtgtgtctggggctgctgtgtgttctcctactggctgggatcataggcctgtctgtctactgtaagtTTAGTATGTTTTTACTGAGACTTAAGTAGGCTACTTAATCATACTTACTCATTAATGGTGTTTTAGTTACATGTTTGATAAACTGTTCCCTTTTACAGATGGAGACATTGGTCACCAGCTACAGTCCAGTTACAACATCCTGACTAAAGAgatagaccagctacagaccagttacaacaacctgactaaggagagagaccagctacagaccagttacaacaacctgactaaagagagagaccagctacagaccagttacaacaacctgactaaagagagagaccagctacagtccagttacaacaacctgactaaagagagagaccagctacagtccagttacaacaacctgactaaagatagagaccagctacagactgagagagatttTCTTAGTGGGAGGTCTACCAATCTCAAACAAACCTGTCCTGAAGGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTTCTGAGACTAAAACCtggaaggagagcagagaggactgtctggagagaggagcagacctggtgatcATAAACAGCGATAAGGAacagGAGTTTCTCTTCAAACTCAAGAAGAGAGTatggattggtctgactgactctgttactgaGGCGACCTGGAGATGGGTGGACGGCAccccactgaccaccccaaggtactggtctcCAAATCAGCCTGATAATGGTGATGGCAAACCAGAATATGGTGAGGAGGACTATGTTCAGATACGTAACAATCAGAGTCCTCTGGAGGCATGTGTCCTGTCCATCATCACAAATAGCAAGTCCCATTCCCTGGacaggaggactgtgttgagatATACTCTGGACAAGATGAACATGTAG

Function

NR:

description
C-type lectin domain family 4 member M-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989383.1 True 1109 mRNA 0.45 5 71780585 71784330

Neighbor

gene id symbol gene type direction distance location
LOC110514144 LOC106602209 coding downstream 15080 71747636 ~ 71765505 (-)
LOC110534519 NA coding downstream 19560 71759605 ~ 71761025 (-)
LOC110534950 LOC106595337 coding downstream 27887 71744768 ~ 71752698 (-)
LOC118936748 LOC106602203 coding downstream 45658 71728831 ~ 71734927 (-)
LOC118936746 LOC106602209 coding downstream 114684 71658344 ~ 71665901 (-)
LOC110534569 sgcz coding upstream 220493 72004823 ~ 72351589 (-)
LOC110534795 LOC106602193 coding upstream 789860 72574190 ~ 72578685 (-)
LOC110497295 LOC106602191 coding upstream 864006 72648336 ~ 72661638 (-)
LOC110534773 fgl1 coding upstream 962639 72746969 ~ 72755067 (-)
LOC110534766 LOC106610393 coding upstream 980080 72764410 ~ 72770434 (-)
G922411 NA non-coding downstream 69545 71710298 ~ 71711040 (-)
G922407 NA non-coding upstream 11865 71796195 ~ 71849264 (-)
G922404 NA non-coding upstream 50403 71834733 ~ 71836224 (-)
G922488 NA non-coding upstream 137151 71921481 ~ 71921718 (-)
G922504 NA non-coding upstream 157303 71941633 ~ 71942679 (-)
G922516 NA non-coding upstream 167950 71952280 ~ 71952479 (-)
LOC118936934 LOC106597769 other downstream 183440 71595152 ~ 71597145 (-)
LOC110533203 LOC106610354 other downstream 699073 71064699 ~ 71121753 (-)
G923192 LOC106610383 other upstream 1121247 72905577 ~ 72928468 (-)
G924041 NA other upstream 1845812 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 3132847 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 3153575 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 3268786 75053116 ~ 75056174 (-)

Expression


Co-expression Network