LOC110534569 (sgcz)


Basic Information

Item Value
gene id LOC110534569
gene name sgcz
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 72004823 ~ 72351589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933869.1
ccccctcacaaacacacacacactccccatatCACCCCAATACATCAGTCGTCGGAATTATAGCTGCCTCCATACAGCTCTCCCCTTGGCTTCCCCTTTCTTCAAACCGAACAGAATTTATGTGTATTTGCCGCATGAGGACGTCCAAGCATTGGAACTCAGTTGCTGGGGTTGCAGCAATTCAGCCTGCCGCTTGCTCCGCGCCGGAGACATGAATCTACCATAACGGAATTCGCGTTCCCTGTCAAAATCGGAGAAATCAAAACTGTTTGTTTGCCGCCTCATGGGGGTTATATTTCGTTTCTGCTGGTCAATAACTGTCGTCAAGTGAATAGCTGTTATCGCCATCGCTTCAATTCCAAACTGGAGGAGTCGTGATCAACGGGAATGAAATTGAGAAAATCGTCCGCGGGTTGGAGGACGGGGCTGAGTTTAGGTCGGGAACTACGAGTCTAGATATTTCTAACTTTGTGCGCAAGACTTTCTCTTTCTATATGGACCGATCAACATCACTGGATATCGAGGCTCTGAAGatgACCCAGGAGCAGTACATCCTCGCGGCCCAGCCCAACACCCTGAGCCAGCGGGTACACCAAGGTGCCCAGGCCTACCCGGTGGGTATCTACGGCTGGAGGAAGCGCTGCCTCTACTTTTTCATCCTCCTGCTCCTGGTCACCATGATCGTCAACCTGGCGCTCACCATCTGGATCCTCAAGGTCATGAACTTCACCGTGGATGGAATGGGTAATCTTCGTGTAACCAAAGAGGGGATCAGGCTAGAGGGTGTTTCGGAGTTTCTGCTCCCTCTCTACGTGAAAGAAATAGAATCCAGAAGGgacaaTCCTCTGATCCTGCAGTCAGACAGGAATGTGACGGTGAACGCAAGAAACAACCTTGGTCAGCTAACAGGACAGCTCACTGTGGGCTCGGAGATGGTGGAGGCCCAGTGTCAGAGGTTCGAGGTGAGGAGTCCTGACGGGGAGCGGGTGCTCTTCTCCGCTGACGAGAAGGAGATCAGCATCGGCACTGAGAAACTGAGGGTGACAGGGAACGAAGGTGTCGTCTTCGGACATTCAGTGGAGACATCCCACATCAGAGCAGAACCTTTCCAGGATCTCAAGCTGGAGTCTCCCACCAGGACCCTGAGTCTGGAGGCTCCCAGAGGGGTGGAGGTCAACGCCGGGGTGGGCGACTTCAAGGCCTCCTGCCGGAAAGACCTGTTGCTCCAGTCGTcagaaggagagaTCTTTTTAGATTCCAACACAATTCGGCTGGGGAACATTCCTCACGGGACAGCGGCAGACCCGCTGCACGGGGCGCCGGGCACCACGTACCCCAAACAGACTGTGTACGAGCTGTGCGTGTGCCCAAGCGGCAAGCTCTACCTGTCCCCGGCTGAGAAGGGCTCCACCTGCCAGACGACCAGCAACGTGTGTCTGTGGAGCTGAGAGAGGGGGGGCCAGCGGACCGCTGAACACCAGAAAGGCCTTCCCCTCATTAGGATCCCAGTCCAGGATACCAGGACCCCAACAGACCCTGATCCCCATCCATACTGTTCCCCATCCATCGATATATTTACTTTCTTTGACAGACATTcttcattttctttctttctctgtggtcactctctctttctctctttctcatctctctctttctcatctctctctttctctctttctcatctctctct
>TU1049383
TTGGAACTCAGTTGCTGGGGTTGCAGCAATTCAGCCTGCCGCTTGCTCCGCGCCGGAGACATGAATCTACCATAACGGAATTCGCGTTCCCTGTCAAAATCGGAGAAATCAAAACTGTTTGTTTGCCGCCTCATGGGGGTTATATTTCGTTTCTGCTGGTCAATAACTGTCGTCAAGTGAATAGCTGTTATCGCCATCGCTTCAATTCCAAACTGGAGGAGTCGTGATCAACGGGAATGAAATTGAGAAAATCGTCCGCGGGTTGGAGGACGGGGCTGAGTTTAGGTCGGGAACTACGAGTCTAGATATTTCTAACTTTGTGCGCAAGACTTTCTCTTTCTATATGGACCGATCAACATCACTGGATATC

Function

symbol description
sgcz Predicted to be involved in cardiac muscle tissue development and heart contraction. Predicted to be located in plasma membrane. Predicted to be part of sarcoglycan complex. Predicted to be active in sarcolemma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933869.1 False 1693 mRNA 0.53 8 72004823 72351589
TU1049383 True 370 lncRNA 0.47 1 72351069 72351438

Neighbor

gene id symbol gene type direction distance location
LOC118966648 LOC106610349 coding downstream 220493 71780585 ~ 71784330 (-)
LOC110514144 LOC106602209 coding downstream 239318 71747636 ~ 71765505 (-)
LOC110534519 NA coding downstream 243798 71759605 ~ 71761025 (-)
LOC110534950 LOC106595337 coding downstream 252125 71744768 ~ 71752698 (-)
LOC118936748 LOC106602203 coding downstream 269896 71728831 ~ 71734927 (-)
LOC110534795 LOC106602193 coding upstream 222601 72574190 ~ 72578685 (-)
LOC110497295 LOC106602191 coding upstream 296747 72648336 ~ 72661638 (-)
LOC110534773 fgl1 coding upstream 395380 72746969 ~ 72755067 (-)
LOC110534766 LOC106610393 coding upstream 412821 72764410 ~ 72770434 (-)
LOC110534754 LOC106610391 coding upstream 418984 72770573 ~ 72779904 (-)
G922692 NA non-coding downstream 159 72003895 ~ 72004664 (-)
G922688 NA non-coding downstream 11619 71993005 ~ 71993204 (-)
G922685 NA non-coding downstream 20289 71984316 ~ 71984534 (-)
G922683 NA non-coding downstream 22292 71982165 ~ 71982531 (-)
G922536 NA non-coding downstream 29870 71974667 ~ 71974953 (-)
G922858 NA non-coding upstream 1717 72353306 ~ 72353545 (-)
G922891 NA non-coding upstream 5656 72357245 ~ 72357645 (-)
G922894 NA non-coding upstream 7335 72358924 ~ 72360809 (-)
G922912 NA non-coding upstream 55614 72407203 ~ 72408998 (-)
G922933 NA non-coding upstream 112029 72463618 ~ 72465460 (-)
LOC118936746 LOC106602209 other downstream 341689 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 407678 71595152 ~ 71597145 (-)
LOC110533203 LOC106610354 other downstream 923311 71064699 ~ 71121753 (-)
G923192 LOC106610383 other upstream 553988 72905577 ~ 72928468 (-)
G924041 NA other upstream 1278553 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 2565588 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 2586316 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 2701527 75053116 ~ 75056174 (-)
G922856 NA non-coding downstream 1007 72349828 ~ 72350062 (-)
G922855 NA non-coding downstream 1889 72348914 ~ 72349180 (-)
G922848 NA non-coding downstream 11919 72338872 ~ 72339150 (-)
G922845 NA non-coding downstream 16218 72334436 ~ 72334851 (-)
G922844 NA non-coding downstream 16749 72333996 ~ 72334320 (-)

Expression


Co-expression Network