LOC110534795 (LOC106602193)


Basic Information

Item Value
gene id LOC110534795
gene name LOC106602193
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 72574190 ~ 72578685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619745.2
ACCACTTGGAGCCAGCCAGGGAAGCCGTAGTGTTCTGTACATAGGCTACTGCGCATTCCCCTGCGACACCATAGAGAAAACCTCATTGATTCACACGGCGTTTTATTAAAGGACCAACTCTCATTGACTTCTCTCTCACTTGTTCTCCTTTCAAATCGCTTACAGTACTTTTCATAATCCATCTACGGGATGATGATAATCGGCGATGCAGATGAAACTGAACATCAAAGGTGTGAGGACGGTCAAGGATCAAGGAGTTATGTTTCAAAAAGAAATCTATAAAGCGTCTCATTAGCATACGGCAAGAGGGAATTTACATACGGAATATATTTAAAGTGGCGCTCGCACTCTCACGCTCGCACTCTTCATTTGCAGAACGCAGTGAGCACGAGCTGAGCACTCTCCCGGCAACCGCATCAACGACTGCGAGGGGAGGAAAACCCGGACGAACAAACAGAGCAAAGGGGAGTAGCCCGAGGTCGAGAGAGGAGAGCATGTGCTGAACTGAGGATAAACGGATAATATGCGGATGTAAATAAAACGCGCACTtgcaagagagagaaaaaacgcATTTGGTGACTGCGCAAAAACACACATTCACTCAGGAGGATCCCTCTTTCAGGAGCACAGTACGTTAACTTTTCTACCCGGTTCAAGGCGGCTGGTTGTGAAGCGTGCGGGGCGGTGGTTTTTGTGATGGGGGCAGTGGGCGAGGTGGGTACATTTTCCTTGCACGGCCTGGATAGCTTCGGACACGGATCGCATTTTGTCCTGACGCCCGCTGGGGACACCCCCGGACTGATGAGCGAGCACCTGGTGTCGGCCGAGAGGTTGTCGCGGAGCACGCCGTCGGATCTGACGCATCTGAAGGGGATTCTACGGAGGAGGCAGCTGTACTGCAGGACCGGGTTCCACCTCGAGATACTGCCCGATGGCACAGTGCAAGGCACCAGGAAAGACCATAGCAGATTTGGTATTTTGGAGTTCATCAGCTTGGCTGTGGGGATGGTGAGCATCCGTGGGGTGGACAGTGGATTATACCTGGGCATGAACAGCAAGGGAGACCTCTACGGCTCTgagaaGCTGACAGCCGAGTGCGTGTTCCGGGAGCAGTTTGAGGAGAACTGGTACAACACGTACTCATCCAACCTCTACAGACATGGTGACCGGGGAGCGCACTACTTCGTGGCGCTCAACAAGGACGGCACGTCCAGGGACGGTGCCCGCTCCCGGCGACACCAGCGCTTCACCCACTTCCTGCCCAGGCCCGTAGATCCCGACCGTGTACCCGAACTCTACAGAGAGGTCCTGGGCCACAGCTGAGACCCGGTGAGAGTGTGTTGGTCCCTGCGGCGCTACACACCCAGCACACTGCACCGTGACTCTCAGTACTCTCCTATGAAGGGTCTGCATATCGTTAGTCTCCCTATGGCTTCCTATGGAAACAAAATGGAGGAAAGGTCGCttgggggctgtggggtggatagCAAATATGTGTGAAGCCTGGCCTTGCGGTCCCCGAAAATGGGTCAAGGCCGGTGCAGCCCCAGGAGAAAGGAGTACAGGTGTTTAATAGGGGCTATTTGGCCAAAAGAGAGGCTGGCCTGGTGGCCATCTTTGTTTTGAGCATCGTGTTGGAAGGTGAATGGATCACCTCCAGAGCTGCTGATGTCATCTTTCCGGATGGTTCTTCTTCACCACCCCCTGAGTGGCTTCTGACATTCTGATTGGTCAATCTATCTGTAGTGAAATGGGAGTAGGAGAAGAAGAGTGGATGGTCCTCCAGCGGAGTGTAGACTTTGTGTTCTTCTGTGGTACCCCAAGGTGGACTGTTTTGACGAAACACTCTAGAAGATTTGTGAAGGAATTCTGTTCTGAACCTTCCGTAACTGCATTCTATTCCCTGACACGAGCATGGACGAGAAAAAAAGACTTACAAAATAACCTTAGCCTGTTTCAGTTTTTTTAATTTATGCATTTTTCTGGgacatatatttattttatatatttatttattttgagaatatattttttacagGTATATATAAGATATTAAAAATAAGCCCTCAGAGATGTATTTTGTGCCACTGTGTAAAGTACTGCATTTGACATGTCCTTTCAAACTGACTGAAGAAATATTTTCCTAGGAGTTTTTATTTAGACAATGGTTTGTGTAAGGCCGCGTTGTCACTATTCCCGAGCTTGTCATCATCGGGGCGTCCATGTTTCTCTTAT

Function

NR:

description
fibroblast growth factor 20-like

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0031101 fin regeneration biological_process
GO:0060249 anatomical structure homeostasis biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619745.2 True 2235 mRNA 0.50 3 72574190 72578685

Neighbor

gene id symbol gene type direction distance location
LOC110534569 sgcz coding downstream 222601 72004823 ~ 72351589 (-)
LOC118966648 LOC106610349 coding downstream 789860 71780585 ~ 71784330 (-)
LOC110514144 LOC106602209 coding downstream 808685 71747636 ~ 71765505 (-)
LOC110534519 NA coding downstream 813165 71759605 ~ 71761025 (-)
LOC110534950 LOC106595337 coding downstream 821492 71744768 ~ 71752698 (-)
LOC110497295 LOC106602191 coding upstream 69651 72648336 ~ 72661638 (-)
LOC110534773 fgl1 coding upstream 168284 72746969 ~ 72755067 (-)
LOC110534766 LOC106610393 coding upstream 185725 72764410 ~ 72770434 (-)
LOC110534754 LOC106610391 coding upstream 191888 72770573 ~ 72779904 (-)
LOC110534749 LOC106602187 coding upstream 203046 72781731 ~ 72791068 (-)
G922946 NA non-coding downstream 94263 72479621 ~ 72479927 (-)
G922940 NA non-coding downstream 102209 72471146 ~ 72471981 (-)
G922937 NA non-coding downstream 107395 72466504 ~ 72466795 (-)
G922933 NA non-coding downstream 108730 72463618 ~ 72465460 (-)
G922912 NA non-coding downstream 165192 72407203 ~ 72408998 (-)
G923214 NA non-coding upstream 5057 72583742 ~ 72585219 (-)
G923228 NA non-coding upstream 44959 72623644 ~ 72624115 (-)
G923261 NA non-coding upstream 118333 72697018 ~ 72698196 (-)
G923262 NA non-coding upstream 123074 72701759 ~ 72703712 (-)
G923272 NA non-coding upstream 138924 72717609 ~ 72718442 (-)
LOC118936746 LOC106602209 other downstream 911056 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 977045 71595152 ~ 71597145 (-)
LOC110533203 LOC106610354 other downstream 1492678 71064699 ~ 71121753 (-)
G923192 LOC106610383 other upstream 326892 72905577 ~ 72928468 (-)
G924041 NA other upstream 1051457 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 2338492 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 2359220 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 2474431 75053116 ~ 75056174 (-)

Expression


Co-expression Network