LOC110534782 (LOC106610388)


Basic Information

Item Value
gene id LOC110534782
gene name LOC106610388
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 72804653 ~ 72808271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619729.2
ttgtttgctagctagcctGCTTAGTAAGGTTGGCTTCATAGCAATCACagaaaaataaagtggtgacagCTGCATAGAAGTACGGTATTTGACAAGAGTTAAAGGGTATATTGGGAGGTGGTGTCCCGTCCCCCAGGCCGTTTGCATGGTGTACTGTACTACCCGATAGGATCATGTAGTGGAATGGTAACgttagtgggtttttaatgagtgtaggtgaCAGCTGCAGAGAAATACCTTGGTGtacgagaggagaggggggtgattTTAATGAAataggtgtagggttagttggtggatttatttattttaggaaCAGGAATAATGAGAATTTAATGTAGGTAGGAAATGACTGGCCTCACTTTAGTACAGCAGCGGTGTATGCACATTTAAATTGTATGCGATAGGCCAATCCCGAAGAaggagaatcaaatcaaatgtatttataaagcccttcttacatcagctgatatctcaaagtgctgtatagaaacccagcctaaaaccccaaacagcaatgcaggtgtagaagcaatgCAGAGAAGAGGCTAGCTGGCTTGTGCTTGTAgtcaaatcatttaaaaaaagatgTTCAACGAAATCGTTTTTCGTGCGCGTGTAGTGTCCGTTATGGAAACTTTAACAGCAGCAGCCGTGcgagcagtgtatcaaataatgGAAGAAAGCTACGCTGCCCTTCGTGTGGAAATGGAGTGTAGCCATGAACCGAACAAGAAGCCCCTGACGATGGAGAAGGAGACTGTGCAAGCATTTAACCCTTGCCGTTCTCCTGATCGTATACAAATGGAAGGTTTGAGAAAGACCCCTGTTGATGAACAGCAGGATGAAGACGAGGCCAGCGGTGCTGATATGGAAGATGATCCCATGGACCACGATGATCTCACAGGTCATGATGATTACACTCCACTGTTACCGATGTCATCGCAAGGACCATCACAGCCTGTTAAACCAAAGACCACATCCTCTCTGGTTAAGCTTACAGAAGATGAGGTGCACCATTCGATTGTTCCTGTCAATGCTCTACTATCACTCACAAGATGCACAACCTGCTGCAAATTGTTCCACTGTCCACTTTGTCTCAGCTTTAAACCAACCAAACGCTCAGGATTACAGCGCCATGTTGATGTGCACCTGAAAAATGCAGTGTCCTTCAAAGGTGTGCGGATGTTTTAACCATGTAGTCTGGTAGATTGTATTATCGTTCTTGTCAAGATGTGCTTTACTCATTTCCGTCTCAT

Function

NR:

description
uncharacterized protein LOC110534782 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619729.2 True 1259 mRNA 0.44 3 72804653 72808271

Neighbor

gene id symbol gene type direction distance location
LOC110534744 LOC106602172 coding downstream 1331 72792610 ~ 72803322 (-)
LOC110534749 LOC106602187 coding downstream 13585 72781731 ~ 72791068 (-)
LOC110534754 LOC106610391 coding downstream 24749 72770573 ~ 72779904 (-)
LOC110534766 LOC106610393 coding downstream 34219 72764410 ~ 72770434 (-)
LOC110534773 fgl1 coding downstream 49586 72746969 ~ 72755067 (-)
LOC110534748 LOC106602173 coding upstream 265 72808536 ~ 72852684 (-)
LOC110534756 LOC106610383 coding upstream 95041 72903312 ~ 72906796 (-)
LOC110497284 LOC106602177 coding upstream 101298 72909569 ~ 72917849 (-)
LOC110497281 LOC106610383 coding upstream 112187 72920458 ~ 72924307 (-)
LOC110497279 LOC106602180 coding upstream 117036 72925307 ~ 72931467 (-)
G923297 NA non-coding downstream 43392 72760482 ~ 72761261 (-)
G923272 NA non-coding downstream 86211 72717609 ~ 72718442 (-)
G923262 NA non-coding downstream 100941 72701759 ~ 72703712 (-)
G923261 NA non-coding downstream 106457 72697018 ~ 72698196 (-)
G923228 NA non-coding downstream 180538 72623644 ~ 72624115 (-)
G923320 LOC106602173 non-coding upstream 59315 72867586 ~ 72868626 (-)
G923326 NA non-coding upstream 76350 72884621 ~ 72885147 (-)
G923185 LOC106610383 non-coding upstream 107328 72915599 ~ 72922200 (-)
G923192 LOC106610383 non-coding upstream 117189 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 1040733 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1056769 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1141519 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 1207508 71595152 ~ 71597145 (-)
LOC110533203 LOC106610354 other downstream 1723141 71064699 ~ 71121753 (-)
G924041 NA other upstream 821871 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 2108906 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 2129634 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 2244845 75053116 ~ 75056174 (-)

Expression


Co-expression Network