LOC110497284 (LOC106602177)


Basic Information

Item Value
gene id LOC110497284
gene name LOC106602177
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 72909569 ~ 72917849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573318.2
TTATTTTGAAAAGCcaacccttattctaaaaaaagATCCAGGAAGTAGCGTAACAAACGAGATGTGTGTGAAGTATACGCTATATGGTGTGAGCTGTGTCGTCTCATGACGTTGACTGAATACCCAAATGTAAATTACTTTAACATAAGTGTTTAACATAAAGGACATGTACGATACCGTCGCCTTTCATGCTCAGTTAGCCTCCATCATTGAGGTTTTGGCAAATGCAGCCGTTGCCGAAATCTGCAAACTTGTAGATGACGGCCATGCTGCCTTACGTTTGGAAATTTCCCATAGCCAGAAAGAAATCGATAACCTGCGGAGGAAGCTGCTTTTGACAAAATTCCAGAATTCTCGACGAAGCGCAGAAAGATTTGGACCCCTGCGACGCACAGTTTACAGGCGCGTTGACAGCGGTCATATTGTTCGGGAAAGAGGGAGCTTCGTAGGAAAGTCAACAGGGTTCTCTTTTCTGGTGCAGTGGAAAATCGTCTTGACGACAGCGATGGAGGCAACTTTATGCAGGATGTCACCAACTGGAGAGACGCAGGACTCACAGGGATAGACCATGATGGGGGCATGCAGACGGCAGAAATGCAAGAGGCACCTCTTATCAAAATGGAGAACCATGGCACCAGCAGAACAGAAGAGATTGTCCAACCAGTCAGTGAGAGCAGTGAGAAGATTGTGCCAGAACCAGGTTCTTCATCATCTACTGAACCCATAGACCTTCTGGACCAGCAGGGCAACAGACACAGAGCTCCAGACACCTCACTCAATATAGAACCTGAAAACCAGACGTTCCAGCATCCAGCGTCACAATACAACAGAGCAAGACAGGACCATCAGGTTGCTGAGAGTGTGACCTGGGAAACTGACCATCAACCCATAGAATACAGCCTGTCCCAATGGACAGAGAACCAAGAGACTGACAACCCAACTGTGAATGCTCCTCACAATTTAGGGCCAGACTCCAAAAGGCTGTCTGAACatccagagaggagaggggtgcctGGTAACTCTGGGGTCTACATGTCTTCTTTGGGCTCTCTGGACTGGCTGCCTGATGTGGTGCTGGTGGACTCAGTTCCCATTAAAGTGGAGGCAGATATGAGTTCAGAATGGAGCATAACTGGCCAAGAGGTGACATCTGGAGACATCTGTTCAGAAAGCAGGCAGCTTGTGGAcaacagaggaagagggggaatgGAGTCTGGACAGACAAAGTGTCCCCATGACACTCAAAACACAGAGCAAGGGACAACTGTAGGATCAAGGTCCAAGATGCCGGATTTCAATGGACTGTCCACCAAAAACAGCTTTTCATCCCCAACGGTTACTCTCCACCAGGTTCCCCAAAGAAGGAAGCCAGCCCACTTCCTGAATTTCAGAGGCTCCACTTCTTCATTGAAAGTCGTAGAAAAGCAGCCACAACAGCTGACGTCTCACTCCACCCAGAGGCAACTCCGGTGCAGCCTCTGCGGAAAGCTCTTCCACCAACCGGCGAACCTGCGGAGTCACATGCGGGTCCATACGGGTGAGAAACCGTACGGCTGCAGCCACTGCACCAAGCGCTTCTCCCACAGCCACCAGCTGAAGATGCATGAGAGGGTGCACACCGGAGAGAAACCGTTTCAATGTGTCTACTGTGGGAAGTCCTTCACCCAGTCTGGCCACATGAAGAAGCACCTCCTCGTCCACACTGGTGGCAGGCCACAGGACATTGGGCTGCCCTGAGGGGAGTTTTTCTACACCACGTGACCAGACCAGGGAAAAACTGGTCTTCCCCCATAGTTCCTCTTCCACCCTAGTTGTCAGGGGAATGGTGCTACTCTACTGGGGTTTTCATATGAACACTGGGTCCATGTGTTTTTAACAGTTTGCATAGATACCACATTGAACGCTTCCCtctgtgtgtagtggttgtgttttcAGTTCATGTGGCTTGATACTTGGTCCAGAGTGAACTGATAATGTATATTATTAAAGGTGAAGATTTTAAACATCACATTTTAGTCagttagcagacactcttatccatagCAACTTACAAGTGCAATAAGAGTTAAGTACATTGCTcaaggcacatcaacagatttttcagctTGGTTGGCTTCGCAATTCCAACCTGTGACTTTTCGGTTACTGACTCAaagctcttaactgctaggctacctactgCTAGGCTATATCCTTACGAATTTGTTACCAATAGTATTCATATCAAACAGCAGTTACGAGTTCAGGAAGCACTGGACAGGTGCCTAGGCGAGCGAGGTCTGTTGGTGGTCGAGAGCACGTTTTTGTTTTTACTTGGAAGAACAGagccagggaggaggagggaggcgcAGGGTTCCCAGATGCCAGAACACTCCTGGGTCTGGAAAAGGACCTGGCGACCCAGCAGTTGCAAGGAGAGAGAGTGCTGACTGGAATGAATCCCCACCGTTATCATGGTCTGGGGAAACTTCATCTCCTGGAGCTTCTGGAGTCACTGGTGTGGATCCTCCTGAATGTGTTGCGTGTGGATGGGAAGACAGGCTCCTGGAACCTGTCTCTGGACTGCAGAACCTTACTACACACCATCTtgacaaataaaacaaatcagGACATTCTCCACAGGGAAGTCGTTACTGAAAGGAGGAGAAGCCAGTACATTGTGGTTACAGGTTACTGTGAAGGACAACATGAACCATTATATGCTCACCACATGCTTGCTGCGCTACCTACACCCATATTACCAATGTTGTTattataaatgtttatttttatttacaattgtcatttattgtaaaaacaaaaggCAATGTTTAGCTATTACCCAGGACAATAAGAAATCCCATTGGCTATTTAGCCATTCTATAGCCAGATATTTAAATATTTCTACTGTTACATTGGTCAGCTTTAGAGTGCATTCTCAGTGTGGTGCTTCAGTTAGTTTTCAGACTACTAACCCTTAGCCTACTATTCAATTGATTTACTTTAAATTGAAGGAATGTATTTATTCcctttaaattcaggttgtatgCTGATTCTGTATTTTTCTACGTGAACCAAATGGTAAAATAATCATATTTGGAGGACAAAGTGTTTGTTTTTATTAACTTCATTGAAAGTCAAAAGGCTGATTTTTGTAACATTTGATTCCTTTCAGTCGCTACAATATGATACAGCAGCAGGTAGCAATGTTGGAACTAACATAAGTTGCGTGTAACCAATCTTTATTTT
>XM_021573317.2
CATCATTTTATTTTGAAAAGCcaacccttattctaaaaaaagATCCAGGAAGTAGCGTAACAAACGAGATGTGTGTGAAGTATACGCTATATGGTGTGAGCTGTGTCGTCTCATGACGTTGACTGAATACCCAAATGTAAATTACTTTAACATAAGTGTTTAACATAAAGGACATGTACGATACCGTCGCCTTTCATGCTCAGTTAGCCTCCATCATTGAGGTTTTGGCAAATGCAGCCGTTGCCGAAATCTGCAAACTTGTAGATGACGGCCATGCTGCCTTACGTTTGGAAATTTCCCATAGCCAGAAAGAAATCGATAACCTGCGGAGGAAGCTGCTTTTGACAAAATTCCAGAATTCTCGACGAAGCGCAGAAAGATTTGGACCCCTGCGACGCACAGTTTACAGGCGCGTTGACAGCGGTCATATTGTTCGGGAAAGAGGGAGCTTCGTAGGAAAGTCAACAGTGGAAAATCGTCTTGACGACAGCGATGGAGGCAACTTTATGCAGGATGTCACCAACTGGAGAGACGCAGGACTCACAGGGATAGACCATGATGGGGGCATGCAGACGGCAGAAATGCAAGAGGCACCTCTTATCAAAATGGAGAACCATGGCACCAGCAGAACAGAAGAGATTGTCCAACCAGTCAGTGAGAGCAGTGAGAAGATTGTGCCAGAACCAGGTTCTTCATCATCTACTGAACCCATAGACCTTCTGGACCAGCAGGGCAACAGACACAGAGCTCCAGACACCTCACTCAATATAGAACCTGAAAACCAGACGTTCCAGCATCCAGCGTCACAATACAACAGAGCAAGACAGGACCATCAGGTTGCTGAGAGTGTGACCTGGGAAACTGACCATCAACCCATAGAATACAGCCTGTCCCAATGGACAGAGAACCAAGAGACTGACAACCCAACTGTGAATGCTCCTCACAATTTAGGGCCAGACTCCAAAAGGCTGTCTGAACatccagagaggagaggggtgcctGGTAACTCTGGGGTCTACATGTCTTCTTTGGGCTCTCTGGACTGGCTGCCTGATGTGGTGCTGGTGGACTCAGTTCCCATTAAAGTGGAGGCAGATATGAGTTCAGAATGGAGCATAACTGGCCAAGAGGTGACATCTGGAGACATCTGTTCAGAAAGCAGGCAGCTTGTGGAcaacagaggaagagggggaatgGAGTCTGGACAGACAAAGTGTCCCCATGACACTCAAAACACAGAGCAAGGGACAACTGTAGGATCAAGGTCCAAGATGCCGGATTTCAATGGACTGTCCACCAAAAACAGCTTTTCATCCCCAACGGTTACTCTCCACCAGGTTCCCCAAAGAAGGAAGCCAGCCCACTTCCTGAATTTCAGAGGCTCCACTTCTTCATTGAAAGTCGTAGAAAAGCAGCCACAACAGCTGACGTCTCACTCCACCCAGAGGCAACTCCGGTGCAGCCTCTGCGGAAAGCTCTTCCACCAACCGGCGAACCTGCGGAGTCACATGCGGGTCCATACGGGTGAGAAACCGTACGGCTGCAGCCACTGCACCAAGCGCTTCTCCCACAGCCACCAGCTGAAGATGCATGAGAGGGTGCACACCGGAGAGAAACCGTTTCAATGTGTCTACTGTGGGAAGTCCTTCACCCAGTCTGGCCACATGAAGAAGCACCTCCTCGTCCACACTGGTGGCAGGCCACAGGACATTGGGCTGCCCTGAGGGGAGTTTTTCTACACCACGTGACCAGACCAGGGAAAAACTGGTCTTCCCCCATAGTTCCTCTTCCACCCTAGTTGTCAGGGGAATGGTGCTACTCTACTGGGGTTTTCATATGAACACTGGGTCCATGTGTTTTTAACAGTTTGCATAGATACCACATTGAACGCTTCCCtctgtgtgtagtggttgtgttttcAGTTCATGTGGCTTGATACTTGGTCCAGAGTGAACTGATAATGTATATTATTAAAGGTGAAGATTTTAAACATCACATTTTAGTCagttagcagacactcttatccatagCAACTTACAAGTGCAATAAGAGTTAAGTACATTGCTcaaggcacatcaacagatttttcagctTGGTTGGCTTCGCAATTCCAACCTGTGACTTTTCGGTTACTGACTCAaagctcttaactgctaggctacctactgCTAGGCTATATCCTTACGAATTTGTTACCAATAGTATTCATATCAAACAGCAGTTACGAGTTCAGGAAGCACTGGACAGGTGCCTAGGCGAGCGAGGTCTGTTGGTGGTCGAGAGCACGTTTTTGTTTTTACTTGGAAGAACAGagccagggaggaggagggaggcgcAGGGTTCCCAGATGCCAGAACACTCCTGGGTCTGGAAAAGGACCTGGCGACCCAGCAGTTGCAAGGAGAGAGAGTGCTGACTGGAATGAATCCCCACCGTTATCATGGTCTGGGGAAACTTCATCTCCTGGAGCTTCTGGAGTCACTGGTGTGGATCCTCCTGAATGTGTTGCGTGTGGATGGGAAGACAGGCTCCTGGAACCTGTCTCTGGACTGCAGAACCTTACTACACACCATCTtgacaaataaaacaaatcagGACATTCTCCACAGGGAAGTCGTTACTGAAAGGAGGAGAAGCCAGTACATTGTGGTTACAGGTTACTGTGAAGGACAACATGAACCATTATATGCTCACCACATGCTTGCTGCGCTACCTACACCCATATTACCAATGTTGTTattataaatgtttatttttatttacaattgtcatttattgtaaaaacaaaaggCAATGTTTAGCTATTACCCAGGACAATAAGAAATCCCATTGGCTATTTAGCCATTCTATAGCCAGATATTTAAATATTTCTACTGTTACATTGGTCAGCTTTAGAGTGCATTCTCAGTGTGGTGCTTCAGTTAGTTTTCAGACTACTAACCCTTAGCCTACTATTCAATTGATTTACTTTAAATTGAAGGAATGTATTTATTCcctttaaattcaggttgtatgCTGATTCTGTATTTTTCTACGTGAACCAAATGGTAAAATAATCATATTTGGAGGACAAAGTGTTTGTTTTTATTAACTTCATTGAAAGTCAAAAGGCTGATTTTTGTAACATTTGATTCCTTTCAGTCGCTACAATATGATACAGCAGCAGGTAGCAATGTTGGAACTAACATAAGTTGCGTGTAACCAATCTTTATTTT
>TU1049967
TATCAAACAGCAGTTACGAGTTCAGGAAGCACTGGACAGGTGCCTAGGCGAGCGAGGTCTGTTGGTGGTCGAGAGCACGTTTTTGTTTTTACTTGGAAGAACAGagccagggaggaggagggaggcgcAGGGTTCCCAGATGCCAGAACACTCCTGGGTCTGGAAAAGGACCTGGCGACCCAGCAGTTGCAAGGAGAGAGAGTGCTGACTGGAATGAATCCCCACCGTTATCATGGTCTGGGGAAACTTCATCTCCTGGAGCTTCTGGAGTCACTGGTGTGGATCCTCCTGAATGTGTTGCGTGTGGATGGGAAGACAGGCTCCTGGAACCTGTCTCTGGACTGCAGAACCTTACTACACACCATCTtgacaaataaaacaaatcagGACATTCTCCACAGGGAAGTCGTTACTGAAAGGAGGAGAAGCCAGTACATTGTGGTTACAGGTTACTGTGAAGGACAACATGAACCATTATATGCTCACCACATGCTTGCTGCGCTACCTACACCCATATTACCAATGTTGTTattataaatgtttatttttatttacaattgtcatttattgtaaaaacaaaaggCAATGTTTAGCTATTACCCAGGACAATAAGAAATCCCATTGGCTATTTAGCCATTCTATAGCCAGATATTTAAATATTTCTACTGTTACATTGGTCAGCTTTAGAGTGCATTCTCAGTGTGGTGCTTCAGTTAGTTTTCAGACTACTAACCCTTAGCCTACTATTCAATTGATTTACTTTAAATTGAAGGAATGTATTTATTCccttta

Function

NR:

description
uncharacterized protein LOC110513535, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573318.2 False 3228 mRNA 0.46 7 72909569 72917842
XM_021573317.2 False 3215 mRNA 0.46 7 72909569 72917849
TU1049967 True 792 lncRNA 0.44 4 72909784 72915023

Neighbor

gene id symbol gene type direction distance location
LOC110534756 LOC106610383 coding downstream 2773 72903312 ~ 72906796 (-)
LOC110534748 LOC106602173 coding downstream 56885 72808536 ~ 72852684 (-)
LOC110534782 LOC106610388 coding downstream 101298 72804653 ~ 72808271 (-)
LOC110534744 LOC106602172 coding downstream 106247 72792610 ~ 72803322 (-)
LOC110534749 LOC106602187 coding downstream 118501 72781731 ~ 72791068 (-)
LOC110497281 LOC106610383 coding upstream 2609 72920458 ~ 72924307 (-)
LOC110497279 LOC106602180 coding upstream 7458 72925307 ~ 72931467 (-)
LOC110534758 LOC106602178 coding upstream 16924 72934773 ~ 72938701 (-)
LOC110534797 LOC106610379 coding upstream 28448 72946297 ~ 72949444 (-)
LOC110534751 ma7d1 coding upstream 31744 72949593 ~ 72954736 (-)
G923326 NA non-coding downstream 24422 72884621 ~ 72885147 (-)
G923320 LOC106602173 non-coding downstream 40943 72867586 ~ 72868626 (-)
G923297 NA non-coding downstream 148308 72760482 ~ 72761261 (-)
G923272 NA non-coding downstream 191127 72717609 ~ 72718442 (-)
G923262 NA non-coding downstream 205857 72701759 ~ 72703712 (-)
G923192 LOC106610383 non-coding upstream 7611 72905577 ~ 72928468 (-)
G923334 NA non-coding upstream 14458 72932307 ~ 72932730 (-)
G923335 NA non-coding upstream 15306 72933155 ~ 72933392 (-)
G923337 NA non-coding upstream 23424 72941273 ~ 72941486 (-)
G923339 NA non-coding upstream 32597 72950446 ~ 72951057 (-)
LOC110514144 LOC106602209 other downstream 1145649 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1161685 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1246435 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 1312424 71595152 ~ 71597145 (-)
LOC110533203 LOC106610354 other downstream 1828057 71064699 ~ 71121753 (-)
G924041 NA other upstream 712293 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 1999328 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 2020056 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 2135267 75053116 ~ 75056174 (-)
G925211 NA other upstream 2366142 75283991 ~ 75284673 (-)
G923185 LOC106610383 non-coding upstream 576 72915599 ~ 72922200 (-)

Expression


Co-expression Network