LOC110534758 (LOC106602178)


Basic Information

Item Value
gene id LOC110534758
gene name LOC106602178
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 72934773 ~ 72938701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933921.1
TTTCAAAACATTCGGTTCATTTTAGTAGCACCAACAACATGATAGAGCAGCGGGTGGCAACGTTGAAAGGTAGAACTAACAAGTCGTGTGAGCAaccaattttttattttaaaaaccaacccttattttgaaaAACAATTCAGGAAGTAGCCCTAATTTTGTTTCCGGAATGAAATTCTGTGTGTGTAGTATACCGTCTACATTGTGAACTTTGAATTCTCAAAACATTGCCTGAATACTGCAAATTACTATAACATAATTGTTAAATATTTACATAGTTCCAAGGACATGTGCGATAGCGTCGCCTTTCATGCTCAGCTAGCTTCAATAATTGAGGTTTTGGCGAATGCAGCCGTTGCCGAAATCTGTAAACTTGTAGATGATGGCCATGCTGCCTTACGTATGGAAATTTCCCATAGCCAGAAAGAAATTGATAACCTGCGGAGGAAGCTGCTTTTGACAAAATACCAGAGTTCTCAACGGGGCACAGAGAAATTCGGAGCCCTGCGACGCACAGTTCACAGGCGCGACACCGATCTTGTTGCCCGAGCAAGAGCGAGCTTCGTTGGAAAGTCATCAGGCAGACATGGATATTTGGAGAATCGTTTTTCCAACAGTGAAGGGGACAACTTCACAAAGGATGTCACGAACTGGAAAGACGCAAGACGCACAGCGACAGACCAGGATGGGAGCATGCAGATGGCAGATATGCCAGAGTCACCTCTTATCAAAATGGAGAACCTTGGCTCAAGCAGAACAGAAGAGATTGTCCAACTGGTCAGTGAGAGCAGTGAGAAGATCATTGTGGCAGAACCAGGTGCTTCGTCATCTACTGAAACCACAGACCTTCTGGACCAGCAGGGCAACAGACACAGAGCTCCAGACACCTCACTCAATATTGAACCTGAAAACCAGATGTTCCAGCATCCAGCGTCACAATACAACAGAGCAAGACAGGACCATCAGGTTGCTGAGGGTGTGACCTGGGAAACTGACCATCAACCCATAGAATACAGCCTGTCCCATTGGACAGAGAACCAAGAGACTGACAGCCCAACTGTGAATGCTCCTCACAATTCTGGGCCAGACTCCAAGAGGCTGTCTGGACatccagagaggagaggggtgcctGGTAACTCAGGGGTCTGCATGTCTGCTTCAGGCTCTCTGGACTGGGTGCCTGATGTGGTGATGGTGGACTCAGTTCCCATTAAAGTGGAGGCAGATATGAGTTCAGAATGGAGCATAACTGGCCAAGAGGCGACATCTGGAGAGGTCTGTTCAGACGGTAGGCAACTTGTGGAcaacagaggaagagggggaatgGACTCTGGACAGACAGAGTGTCCCCATGACACTCAAAACACAGAGCAAGGGACAACTGTAGGATCAAGGTCCAAGATGTCAGATTTCAACAGACTGTCCTCCCTAAACAGCTTTTCATCCCCAAGTGTTACTCTCCTCCAGGTTCCCCAAAGAGGGAAGCCAGCCCCCTTCCTGAATTTCAACAGAGGCTACAATTTTTCATCGAAAGGCAAAGAAAAGCAGCAACAACAGCTGACGTCTCACTCGCCCAAGAGGCAACTCCGGTGCAGCCTCTGTGGAAAGCCCTTCCCTCAGCCGGCGCAACTGCGGAGTCATATGCGGGTCCATACGGGGGAGAAACCGTACGGCTGCAGCCACTGCACCAAGCGCTTCTCCCACCGGCACCAGCTGAAGATGCATGAGAGAGTGCACACCGGAGAGAAACCATTTCACTGTGTCTACTGTGGGAAGTGCTTCACCCAGTCTAGTCACATGAAGAGGCACCTCCTCGTCCACACTGGTGGCAGGCCACAGGACATTGTGCTGCCCTGAGTGTTCCAGGGTGAAATTTCCCcttggtacagatctaggatcagcttcctcttctccaatcctaaccttaaccattagtaggAAAACATCTAAAACTAACCCAAGATCAGTGTGGAGGGGCAACTTCACACTACTCCGCCTGGTGTAATTATAGGcaaggccaggagtttttcctcacCACGTGACCAGACctgggaaaaactcctggccctagttgTAAGGGGAATGGCTCAACACTACTGTGTTTTAATATGCATACTGGGTCTTTGTGTTTTTAACAGTTTGGATAGTTACCACATTGAACACTACCCtctgtgtgtagtggtagtgttttCAGGTCAGCTGTCTTGATGCTTGGTCCGGAGTGGATTGATAATGTATAAGTTATTACAGGTGAAGATTTTAAACATCCTTATGAATTTGTATTGGTGCAGTGGTAAACCAAAGAACAGCAATTAACAATTCAGGAAGCTCTGGACAGGTGTCTGGATGAGCTAGGCCTGTTGGTGGTCGAGAACGCATTGCTCGGTTCATCTCGTACCTGGacatagggaggaggagggtgcaGGGAAGAGTGTGATGATGACTGTCACTTTCTGGACATCGACATGGCAGAAGAGAAGAGCCACAGGTTCCCTGGGTGCCAGCACACTCCTGGCCCTTGAAACAGATCTGGCGACCCAGCAGGTGCATGGCGAGAGTGCTGACCTGGAATGAATCCCCAGAGGTACCATGGTCTGGGGAAACCTCATCTCCTGGAGCTTCCTCTGGAGTCGCTGGTGTGGATCTTCTGGGATGTGCTGCGTGTGGACGGGAAGAGAGGCTGCTGGAACCTGTCTCTGGTAGCGGAACCTTCCGTACCATCCTgagaaagctgtcatcaaggcaaagagtggctgctttgaagaaaattaattttatattttatattaacTCTTTTttaattactacatgattccatatgttcattcatagttttgatgtcttcactgttattctacaatgtaaaaaatagtaaaaaataaagaaaaacccttgaatgagtag

Function

NR:

description
B-cell CLL/lymphoma 6 member B protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933921.1 True 2904 mRNA 0.48 6 72934773 72938701

Neighbor

gene id symbol gene type direction distance location
LOC110497279 LOC106602180 coding downstream 3306 72925307 ~ 72931467 (-)
LOC110497281 LOC106610383 coding downstream 10466 72920458 ~ 72924307 (-)
LOC110497284 LOC106602177 coding downstream 16924 72909569 ~ 72917849 (-)
LOC110534756 LOC106610383 coding downstream 27977 72903312 ~ 72906796 (-)
LOC110534748 LOC106602173 coding downstream 82089 72808536 ~ 72852684 (-)
LOC110534797 LOC106610379 coding upstream 7596 72946297 ~ 72949444 (-)
LOC110534751 ma7d1 coding upstream 10892 72949593 ~ 72954736 (-)
LOC110533208 LOC106602162 coding upstream 17492 72956193 ~ 72960558 (-)
LOC110534768 LOC106610378 coding upstream 29107 72967808 ~ 72973302 (-)
trnae-cuc-11 NA coding upstream 35483 72974184 ~ 72974255 (-)
G923335 NA non-coding downstream 1381 72933155 ~ 72933392 (-)
G923334 NA non-coding downstream 2043 72932307 ~ 72932730 (-)
G923192 LOC106610383 non-coding downstream 6305 72905577 ~ 72928468 (-)
G923185 LOC106610383 non-coding downstream 12573 72915599 ~ 72922200 (-)
G923337 NA non-coding upstream 2572 72941273 ~ 72941486 (-)
G923339 NA non-coding upstream 11745 72950446 ~ 72951057 (-)
G923353 NA non-coding upstream 25976 72964677 ~ 72967425 (-)
G923360 NA non-coding upstream 39790 72978491 ~ 72978932 (-)
LOC110514144 LOC106602209 other downstream 1170853 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1186889 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1271639 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 1337628 71595152 ~ 71597145 (-)
G924041 NA other upstream 691441 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 1978476 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 1999204 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 2114415 75053116 ~ 75056174 (-)
G925211 NA other upstream 2345290 75283991 ~ 75284673 (-)

Expression


Co-expression Network