LOC110533208 (LOC106602162)


Basic Information

Item Value
gene id LOC110533208
gene name LOC106602162
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 72956193 ~ 72960558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934588.1
ATGCTGTTTCGTAATTCACAGCACGTGCGTCAGTGAAATCATGCTGGACAGAACAGTACATAAACAATGGAGAAATCTCCACTCATCACTCCATCACTGGCCTACCTGAGGAAGAGTATCTGAGGAGAACAACAGTGATTTACCTACTACAACAGACAAGcagcaccaccatcatcaccaccatgaaGGTTCTGATCATCTTTGCACTACTTTGTGTCGCCCTCTCTGCTAGGGCAGCAGCAGTTCCTGTGGAGAGCGATGCTGTGGCGGTAGAAGAGACAAAAAGTGCCCCAGAGGAGGCTGTTGAGGTTGAGGCTCCTGCAGCAGAGGAGAAGCTGAGTGACGCCCCAGAAGAGGATGTACAGACTGAGGCTGTTGAAGAGGTGGCTGCGGCACCTAAAGCGGCACGCAGGTTCTGCCCTGACGGATGGTTCAGCTACCAGTCCAAGTGTTACATGTTTGTGAACACTCCTCGGTCCTGGTTCAACGCTGAGGAACATTGCAATGAACTGGGCGCCAGCCTGGCCTCCGCCAGCTCCTCCCCCGAATATCGTTACCTGCAACAGATAACCAGAACAGCCAACAGAGCCACCGCCTGGATCGGTGGATTCTACCTCCAGGGATATTGGATGTGGATCGACCGCTCAGGAATGTATTACACCAATTGGTACAGCCAGAGCACCGCAACCAGCAACTCCTGCATGTACCTGCAATCTGCTGTGGGCCAGGGCTGGAGGAACCTCGGATGTGGCACACAATACCCATTCATCTGCGTGCACAACTATCGCTGTTAGTCAACAAGATATTGCTAATTGCTTGACACCTTTTCAAACCGCTTTCAACATTGGCTTTGTTTACTACTGACTGTAAGTGACTTTATGTGTTCGCCAACGGGCTAAATGTGATGCAATTTCAAATGTAATTGCCCATTTTATGTACCTCAACCTGTATTGTTGTCCTgtaataaacatttttttaagtACTT

Function

NR:

description
PREDICTED: CD209 antigen-like, partial

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934588.1 True 985 mRNA 0.49 9 72956193 72960558

Neighbor

gene id symbol gene type direction distance location
LOC110534751 ma7d1 coding downstream 1457 72949593 ~ 72954736 (-)
LOC110534797 LOC106610379 coding downstream 6749 72946297 ~ 72949444 (-)
LOC110534758 LOC106602178 coding downstream 17492 72934773 ~ 72938701 (-)
LOC110497279 LOC106602180 coding downstream 24726 72925307 ~ 72931467 (-)
LOC110497281 LOC106610383 coding downstream 31886 72920458 ~ 72924307 (-)
LOC110534768 LOC106610378 coding upstream 7250 72967808 ~ 72973302 (-)
trnae-cuc-11 NA coding upstream 13626 72974184 ~ 72974255 (-)
trnae-cuc-12 NA coding upstream 14665 72975223 ~ 72975294 (-)
trnae-cuc-13 NA coding upstream 14846 72975404 ~ 72975475 (-)
trnae-cuc-14 NA coding upstream 15027 72975585 ~ 72975656 (-)
G923339 NA non-coding downstream 5136 72950446 ~ 72951057 (-)
G923337 NA non-coding downstream 14707 72941273 ~ 72941486 (-)
G923335 NA non-coding downstream 22801 72933155 ~ 72933392 (-)
G923334 NA non-coding downstream 23463 72932307 ~ 72932730 (-)
G923192 LOC106610383 non-coding downstream 27725 72905577 ~ 72928468 (-)
G923353 NA non-coding upstream 4119 72964677 ~ 72967425 (-)
G923360 NA non-coding upstream 17933 72978491 ~ 72978932 (-)
G923365 NA non-coding upstream 83021 73043579 ~ 73043800 (-)
G923366 NA non-coding upstream 119361 73079919 ~ 73080119 (-)
LOC110514144 LOC106602209 other downstream 1192273 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1208309 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1293059 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 1359048 71595152 ~ 71597145 (-)
G924041 NA other upstream 669584 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 1956619 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 1977347 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 2092558 75053116 ~ 75056174 (-)
G925211 NA other upstream 2323433 75283991 ~ 75284673 (-)

Expression


Co-expression Network