LOC110534768 (LOC106610378)


Basic Information

Item Value
gene id LOC110534768
gene name LOC106610378
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 72967808 ~ 72973302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619715.2
aactgagctatcgaagggaCATGGAAAAATCCTTGGAGCAAAAGGTACATGTTTATATCGTAGCGTTGAGTTTAGTCTTCTCTACCGGATGTTGATCAACGTCGACCATTCAGCAATCGTGAGATTTCCGTGTATTGAGCCCTCGTCAGAACTGTCGACATGTCTCCAAACGGGTCTTTCCAGGCACAACTTTCTTCAATTATGGAGACGCTGACGACGTCTGCCGTTGCAGAGATTACAAAACTGGTCGATTACAGTTCTGCCCTACTATTCTCGGAGATATCCCGACAACAGGGAGAGAACGACGCTCTTCGGAAGGCATTGTACTGTATGCAAATCGAGCTCGGGACCGAGAGACCAAAGCGGGGCACCTCTTCTGTTGATATATCTTTAGAAGTTCAGCTTTGCGACGAGATCCAGAATAATAAAGGCGTGGGGGACCACAGGTTTCCGGACAAGCAGTTGGTTGTGAGTGAGAGGCACTATGGAGTGGATGCTGCCATCGAATTGGGAGAAACCAGTGCACCTCAGCGCAGAACAGTGAAGGAAGAATGTCCTGATGTGAAACAGGTCATTTTACAACCAGACCCTAAAGGTGAGGACAGGCCGGAGGAGGTTGTGAAAGCTAGTCACCCGGAGGAAGCAGAGCACATCATTATCGGTGGAGAAGGAAATGATGGCCTGTCCCTAAAAGATGATTTCCAGGCCATGGACGAGAGCCAGTCAGAGGCGTACCACAACTCCACAGCAGAGCCAGAGGAAGAAGACACCAGCCAAGACTTCAGCGAGGAGCTGGAGATGTGGGTCAAGTCTGAGCCGGGGTCAGAGAGCGACACCCCCAGCTTCACCCCCAGTGTCGCAGAAAACAAGATGGTCGACCACCTCACGGGCAGGGAAATGCACGCCTGTTCATACTGCAACAAACGCTTCAACTACCGTAGCCAGGTGATAATCCACGAGCGGGTTCACACGAGGGAGAGGCCGTTCGTCTGCAAGCAGTGCGGCAAGGGTTTCTCCCAGATTAACAACCTCAAGAAGCACCAGCTCTGtcacaggggaggggaggggaatcACGAGTGCGGGGAGTGTGGAAAGGCGTTCTGCCACACCCAGAGCCTGAAGAATCACATGGTGGCAGCTCACGGCTTCGGTTCAAGGTTGGACTGCGAGACGTGCGGCAAGACGTTTCACAATAAGAAAGCTCTCATCGCACACTCCACCAGTCACAGCAGGGCTTTTGGCTGCGAGATATGCGGGAAGGCTTTCGGTACGAAACAAACTCTTAAGACCCACCAGTTCACTCACACGGGGGAGCGTCCGTTCATCTGCAACTACTGCGGCAAGAGCTTTGCCTACGTCTGTAACCTTAAAACTCACAAGAGGGTTCACACTGGGGAGAAACCCTTTGGCTGTGAGCTGTGTGGCAAGTGTTTCACTCAGAAACACTGCCTGGAGAAACACTCGTGTGTAGATTAAAGAGCTGTAGATCTACAGAGTAACTGCAGCAAACTACCGTCTATGTTTACTTGTTGGCACCAAATGTTCCATGGCTGTAACGTTCTAATCTGCGTTCTGACTAGAATGTTGTGGTCTtgtagtctgggtaccagtctgtttagctaacGTTCCACTCCTTGTGCTATGGGCCACAGAGACTGGCCTTTCTTCAATCTCAGCGTTTAATATGCAGCTGGATTTTGTGAGGAGTTGCTGATTTGTTGTTGGAAATAACGTTATTGTTTGGCAATGGCACAGAGTACAAGGAGTGGTAtgttagctaaacagactggtacccatgCTAGTGGTCTTGTGCTATCATGGGGGAAATTCTAAACCTAAAACCAAGTTTGTTGAACTCTGCGTATTCTATTGCTTTGTTGTTTCTAGTAAAGTGTCTACATGTGTGTGGGACAGATTGACCTGTGCATACATTTATTGTTTTTTCTTATAATATCACATTGTTATTTTAGGTAATTTGATCAATGTTTAGTTAAATTTTAGCTGACATTTTAATTTGCACGATTACGAAGTACATCGACAGTTACTACTACAACTTCTATCATTACTGTGGCGGTAACAATAGTGTGAGGGGATTGACACACAAAGCCAAATCATCCCTTCACATTCTGATTGGACAGAAATAGATCTCCCCCTGTTGAGTTAGGTTTCtctcaaagtttattggtcgtcACTAGCTTCCACAGCTACAAAGTCATAAACCCGCCCGTTTCTACAGTTTCTCTTCTTACAttttgattttaaacctaaccacaaTGCTATTCTTatacctatccctaaccttaacatgaagagcaaaaatgaaaatacataaatttttacgatatagccagTTTTGACCTTGCGGCTAGTGAAAACAAAGTTTATTCTGATCAAGGTCGTTTTCCCTACTGACCTTTTTTACTGTACTACAAATATTAGCCtacatatattttatttgtttgttttaacaAATGTAATTTTGACAAATCAGCTGGTATTCACTGTGTACATTATATCCAATCCATGCTTTAACGTTGTAATGATAAAATATTGTGTTCTGTCCTGATTCTGTCCACGTATATAGCATAACATATACTGTTGTATTTCATTGGGAAAACAGTTCTTGACCATACGTATTTCACTTGGTCTGGGTATTAAGTGTTGCTAGAATaactttttatttctttcacttTCATCTTAAAGctgcaatcagcagttgaaacaataacaaagcgtccGAGCCACCCCTGTTTTTGGTAACAAAGCACAAGGAGGGGGCTGAAGTAATGTACCAACTCTCAAAtccatagacagagctatggatgcaaggactgaccaaccgtgatatcaaaatgatatttttaaccatgttttgaggctatgtagtgtttgtttacatttactttgtttacaaacattgggatttttaaaaagtatctatttggtgttcttggggtaaaaaaaatgtatttggggttctgatgaggtatgacagttgaatctagctcatgaggcatttataggTTATGTTCTTCAAGAATACATATTCATTTATACGtccaaaatggatgtagcaactgcggATTGCCCTTTTAAAAATTGCCATGCAAATCATACTTCTGTGGTTGATAAATCAGAATAGATCGCAGAGAGTACCAGTATAACAAACACTCCGCACTCTGCTGTGCCCACTCACGCTCTCATAAACCATTCAAGCCTGGTAGGTGGCGGAGGCGAGCTACACACTTTTCTGTAACGGGTACCAAATGGAAGATGCTGGAACAGAGCCAAGATACGGTATAGAATCACTGGCTGAAGTAGAGGAACTTTCGGGGAGTCGGTAGCCTAAATAATTGCATGAGATGAGTTCAATTGGATATAAAATGTACAATTAATGTGATAGCAAGCAATGTAGATAAATACAGCCACTGCAGTAACTAATTGAAAAGCCTGACTAGCTAACTTGATAACTAATGCTAACTTACTGTCCTCGTGGTACGACATGCTAACTATGCAAGTAGCTAGTACACAGGTTAACAGCTTTTATTACAACTAGCAAGCTATAATGTTTTAGTTTGCAAAATTACTTTAGCTAATGGTAGCTTATCCTCTCTTAATGCAGCCAACAGTATTTCGAGTGGACAGCATGCATTTATTGTGTAgtttgtgtgtggcaggcttacaatgatggcaaacaACAACATTTGTGTTTTGCTGAACCTGGTGCCAGAGGTGGTACGCAGCTGGagtttgaatgtttgaaggggtatgggactataaaaTGTTTGGGAACAACTGCCTTAGACAATTACCCCCTCCACAAAAATATACCATATGTTGAATGCCTAggcctagtttttttttttaagttatctGATGGAATTAAATGCATATAAATAGAATGGCATTCCCATTCAAGTTAATTAACCCATTCTATTCATTAGCCATttgttttaactaggcaagaccgTTAAGAACAAAGTATTATTTATAATTACAGCCTAGaaccgtgggttaactgtcttgtctaggggcagaatgacagatatgTATCTTGTCAGGTCAGTGATTCGATCGGGCAACCTTTACAGTTTCTAGCCCAgccctttaaccactaggctacctgctgccccaagaaCCCACCTGTCGCCCCATTTAAAACAATTTGATTGCCGAAATCTGATCAGATAACATTGGCCGGCTGATTGGACAGATGTGAGTTCCCAGAGCTACTTTTATTTGGTTAGTAAATTATACTGATTACAGTAGAACCCCGATTTATTTCATTTTataggtgtagccagcctactacaGTAGTTCAATCAACTCCCTTTGCTCTTGGTCGTTTATGCCAATGGAGCCCAGTAGGTGGCGGTATAGGCCTACACATTCCTCATTTTCATTAGTGGCTGGTGCGCTATTACCGTCACAAGAAGCCAGCAGAAAACGAACAGGTGAACATTTGACATGAGTTAAGTTATTACAAGACGTAGATAAATTTAATCTTGAGATTTATGTTTTTTCTGTGACATTTATTCATGATAATAGTAATTTCAATGACAACCAGAAATGTACATCAGAATTTGAGTTTAACAAGTTGTCACCTGTCACTTTGTTTTCGTGAAAATAAATATTGTTTTAA
>TU1050172
TAGAATGGCATTCCCATTCAAGTTAATTAACCCATTCTATTCATTAGCCATttgttttaactaggcaagaccgTTAAGAACAAAGTATTATTTATAATTACAGCCTAGaaccgtgggttaactgtcttgtctaggggcagaatgacagatatgTATCTTGTCAGGTCAGTGATTCGATCGGGCAACCTTTACAGTTTCTAGCCCAgccctttaaccactaggctacctgctgccccaagaaCCCACCTGTCGCCCCATTTAAAACAATTTGATTGCCGAAATCTGATCAGATAACATTGGCCGGCTGATTGGACAGATGTGAGTTCCCAGAGCTACTTTTATTTGGTTAGTAAATTATACTGATTACAGTAGAACCCCGATTTATTTCATTTTataggtgtagccagcctactacaGTAGTTCAATCAACTCCCTTTGCTCTTGGTCGTTTATGCCAATGGAGCCCAGTAGGTGGCGGTATAGGCCTACACATTCCTCATTTTCATTAGTGGCTGGTGCGCTATTACCGTCACAAGAAGCCAGCAGAAAACGAACAGGTGAACATTTGACATGAGTTAAGTTATTACAAGACGTAGATAAATTTAATCTTGAGATTTATGTTTTTTCTGTGACATTTATTCATGATAATAGTAATTTCAATGACAACCAGAAATGTACATCAGAATTTGAGTTTAACAAGTTGTCACCTGTCACTTTGTTTTCGTGAAAATAAATATTGTTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619715.2 False 4642 mRNA 0.42 4 72967808 72973302
TU1050172 True 745 lncRNA 0.39 1 72967808 72968552

Neighbor

gene id symbol gene type direction distance location
LOC110533208 LOC106602162 coding downstream 7250 72956193 ~ 72960558 (-)
LOC110534751 ma7d1 coding downstream 13072 72949593 ~ 72954736 (-)
LOC110534797 LOC106610379 coding downstream 18364 72946297 ~ 72949444 (-)
LOC110534758 LOC106602178 coding downstream 29107 72934773 ~ 72938701 (-)
LOC110497279 LOC106602180 coding downstream 36341 72925307 ~ 72931467 (-)
trnae-cuc-11 NA coding upstream 882 72974184 ~ 72974255 (-)
trnae-cuc-12 NA coding upstream 1921 72975223 ~ 72975294 (-)
trnae-cuc-13 NA coding upstream 2102 72975404 ~ 72975475 (-)
trnae-cuc-14 NA coding upstream 2283 72975585 ~ 72975656 (-)
trnae-cuc-15 NA coding upstream 3503 72976805 ~ 72976876 (-)
G923353 NA non-coding downstream 383 72964677 ~ 72967425 (-)
G923339 NA non-coding downstream 16751 72950446 ~ 72951057 (-)
G923337 NA non-coding downstream 26322 72941273 ~ 72941486 (-)
G923335 NA non-coding downstream 34416 72933155 ~ 72933392 (-)
G923334 NA non-coding downstream 35078 72932307 ~ 72932730 (-)
G923360 NA non-coding upstream 5189 72978491 ~ 72978932 (-)
G923365 NA non-coding upstream 70277 73043579 ~ 73043800 (-)
G923366 NA non-coding upstream 106617 73079919 ~ 73080119 (-)
G923368 NA non-coding upstream 116320 73089622 ~ 73089839 (-)
trnae-cuc-157 NA non-coding upstream 118116 73091418 ~ 73091714 (-)
G923192 LOC106610383 other downstream 42074 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 1203888 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1219924 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1304674 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 1370663 71595152 ~ 71597145 (-)
G924041 NA other upstream 656840 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 1943875 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 1964603 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 2079814 75053116 ~ 75056174 (-)
G925211 NA other upstream 2310689 75283991 ~ 75284673 (-)

Expression


Co-expression Network