XLOC_002759 (nle1)


Basic Information

Item Value
gene id XLOC_002759
gene name nle1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23070741 ~ 23099869 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005111
GATCAATATCGACAGGTATTTACCATGTTGACAGTATtgagttttgtaaatgtattgagTTCTTGCTGTTTACTTTAATTTAAGAAGTTTTTTTAATGACGAGTGCTtgataaaaataacttgtttcgCAGTTTCGTGGCTCACGTGCTTCGAAGCTGATAGTGTATACTTTAGTGTCTTTGAAGGGAAGATGAGCGCGGATGTGGAGCGTGTGTTGATCCAGCTCCAGGATGAGGCCGGTGAGGTGCTCGGGTCTCCCTTTGATGTGCCGCTGGACATCAGTCCGGACAAACTGCAGCTGGTCTGCAATGCGCTCTTACAGAAGGAAGAGCCGGTGCCTTTCTTGTTCTTTGTGAAAGATGCAGAGCTGGTGTCGTCTCTGGGCTCCTGCATTCAGACATTGGGTCTGGAGACGGAGCAGGTGCTACCGGTGGTGTATCAGCCACAGGCTGTATTTCGTGTGCGGGCTGTGGCTCGGTGCACCAGCTCTCTGGAGGGCCACACTGAGGCCGTCATATCTGTGGCATTCAGCCCGACTGGAAAATATCTGGCCAGTGGATCTGGAGACACGACAGTGAGGTTTTGGGATCTGAGCACAGAAACACCACATCACACTTCTAGAGGACACACACACTGGGTTTTGTCCATTGCTTGGTCTCCAGATGGAAAGAAATTAGCATCAGGCTGCAAAAACAGTCAGattttcttgTGGGATCCAGTCACAGGCAAACAGATTGGAAAGACTTTGACAGGACATACAAAGTGGATCACCTGGCTGTGCTGGGAACCTCTCcatttAAACCCAGAGTGTCGCTATTTGGCAAGCACCAGTAAAGACTGTACGATTCGCATATGGGACACTGTTTTGGGTCACTATGACAAGATCCTAACaggacacacacactctgtgACGTGTGTGAAATGGGGAGGCGATGGTCTCCTCTACACATCATCTCAGGATAGGACTATTAAAGTCTGGAGAGCCAAAGATGGTGTTCAGTGTCGTACACTGCAAGGTCACGCTCACTGGGTGAACACACTGGCCCTCAGCACTGACTATGTCCTGCGTACAGGAGCATTTGAACCCGCGAACGCAACCATAAACCCTCAGGATCTCACCGGATCATTGGAAGAGATCAAGGAAAAGGCTTTGAAGCGCTACAACAGTGTCAGAGGTGAAGGTCATGAGAGGCTGGTTTCTGGATCAGACGACTTCACCATGTTCTTATGGAACCCAGCAGAGGACAAGAAGCCGGTCGCTCGTCTAACAGGTCACCAAGCATTGGTCAATGAGGTGCTCTTCTCACCCGACACACGACTCATAGCCAGCGCTTCCTTCGACAAGTCCATTAAGATCTGGGATGGAAAAACAGGAAAATATCTGAATTCACTGCGGGGCCACGTCGGGCCTGTGTACCAGGTGGCATGGTCAGCAGACAGTCGCCTGTTGGTCAGCGGCAGCAGTGACAGCACTCTGAAGGTGTGGGACATCAAAACGGGAAAACTGAACGCAGACCTGCCCGGCCATGCTGACGAGGTTTTTGCAGTCGACTGGAGTCCTGATGGACAGCGAGTGGCCAGCGGAGGGAAAGACAAATGTTTAAGGATATGGAGGAAGTAAACCAGAGAACCCAGCGGCCCTTGGCTCTACACACAACAGCCAATCAGGCGTCTAGAAGCGTCGCCCCCACAGGACAGTAAACAGCAGTGTCAGAGTATTAAGCCGTCACCTATTTGCCCAAAGAAAAACGGCTTCGACAGCATCACAAAAGCTGACATATAATGCTTTCTGATGCCTGATAGCAGGAAGATAAAACGGCCGATACTCCAACTCAAATGAGCAGTTGCCCTGTAGAAGTGCCACCGAACTGACCCACTCTAATCTGTGTaatctttctcacacacacattctttgTAATTAACTTAATCCCTAATGCTGTGATACAGGCAGTGTTAACCAGGTCTGTCTGAGGGCTGGGAGATAACCAGCGGCGTCACAGTGGGCCGTGTTACGTCAGCACAGACGTTttctcattaagaaaaaaaaaaaagcagttaaaGGGTTTTTATGGGGTCCGTGTTGTGCGTTTGTGGATTTCTTATCTCGGATTAACCACTGTAGGGTGTCAAACGTGCTTTGTTGTTTGTCAAACAGCACATGTATGACGTAAACAGTCTTTAAGAAAAGACGCTGCAGGCGAATATTAAAAAAGTGGACAAAGTTTGCGTCATACTTCCACAGTTGTGAATTGCAAAATTTGCAGttcaaatatgcaaatgaggcactGCTTCATTAAACGCATGTTTCTAGCACAAAAATATGAATTTTGGATTAAGTTAGGTTTACAATACTGTTGTCGACACATTAGAATCTCTTTCATCAGTCCATAATTCAGAAAATTGTAAGAAAAGCCAGAAAGGAATTTCATTTTCACAATCGGTTGTacaattaaatattgtatataatcAGCCATATTATGAATGAACATATCCCTCTGTAAAAGccctttagaatttaaatatgaataaaactgtaaagTTTGGTGTATGCAATAAAAAATGAAGAGGTTTTgctctaaaaaaaaat
>TCONS_00005112
CACGCGATTTAGCCTGCGTCCGAAATACTGCACACTGTACGCGTGGAGTGAGTGTGCGGTGATCAATATCGACAGTGTCTTTGAAGGGAAGATGAGCGCGGATGTGGAGCGTGTGTTGATCCAGCTCCAGGATGAGGCCGGTGAGGTGCTCGGGTCTCCCTTTGATGTGCCGCTGGACATCAGTCCGGACAAACTGCAGCTGGTCTGCAATGCGCTCTTACAGAAGGAAGAGCCGGTGCCTTTCTTGTTCTTTGTGAAAGATGCAGAGCTGGTGTCGTCTCTGGGCTCCTGCATTCAGACATTGGGTCTGGAGACGGAGCAGGTGCTACCGGTGGTGTATCAGCCACAGGCTGTATTTCGTGTGCGGGCTGTGGCTCGGTGCACCAGCTCTCTGGAGGGCCACACTGAGGCCGTCATATCTGTGGCATTCAGCCCGACTGGAAAATATCTGGCCAGTGGATCTGGAGACACGACAGTGAGGTTTTGGGATCTGAGCACAGAAACACCACATCACACTTCTAGAGGACACACACACTGGGTTTTGTCCATTGCTTGGTCTCCAGATGGAAAGAAATTAGCATCAGGCTGCAAAAACAGTCAGattttcttgTGGGATCCAGTCACAGGCAAACAGATTGGAAAGACTTTGACAGGACATACAAAGTGGATCACCTGGCTGTGCTGGGAACCTCTCcatttAAACCCAGAGTGTCGCTATTTGGCAAGCACCAGTAAAGACTGTACGATTCGCATATGGGACACTGTTTTGGGTCACTATGACAAGATCCTAACaggacacacacactctgtgACGTGTGTGAAATGGGGAGGCGATGGTCTCCTCTACACATCATCTCAGGATAGGACTATTAAAGTCTGGAGAGCCAAAGATGGTGTTCAGTGTCGTACACTGCAAGGTCACGCTCACTGGGTGAACACACTGGCCCTCAGCACTGACTATGTCCTGCGTACAGGAGCATTTGAACCCGCGAACGCAACCATAAACCCTCAGGATCTCACCGGATCATTGGAAGAGATCAAGGAAAAGGCTTTGAAGCGCTACAACAGTGTCAGAGGTGAAGGTCATGAGAGGCTGGTTTCTGGATCAGACGACTTCACCATGTTCTTATGGAACCCAGCAGAGGACAAGAAGCCGGTCGCTCGTCTAACAGGTCACCAAGCATTGGTCAATGAGGTGCTCTTCTCACCCGACACACGACTCATAGCCAGCGCTTCCTTCGACAAGTCCATTAAGATCTGGGATGGAAAAACAGGAAAATATCTGAATTCACTGCGGGGCCACGTCGGGCCTGTGTACCAGGTGGCATGGTCAGCAGACAGTCGCCTGTTGGTCAGCGGCAGCAGTGACAGCACTCTGAAGGTGTGGGACATCAAAACGGGAAAACTGAACGCAGACCTGCCCGGCCATGCTGACGAGGTTTTTGCAGTCGACTGGAGTCCTGATGGACAGCGAGTGGCCAGCGGAGGGAAAGACAAATGTTTAAGGATATGGAGGAAGTAAACCAGAGAACCCAGCGGCCCTTGGCTCTACACACAACAGCCAATCAGGCGTCTAGAAGCGTCGCCCCCACAGGACAGTAAACAGCAGTGTCAGAGTATTAAGCCGTCACCTATTTGCCCAAAGAAAAACGGCTTCGACAGCATCACAAAAGCTGACATATAATGCTTTCTGATGCCTGATAGCAGGAAGATAAAACGGCCGATACTCCAACTCAAATGAGCAGTTGCCCTGTAGAAGTGCCACCGAACTGACCCACTCTAATCTGTGTaatctttctcacacacacattctttgTAATTAACTTAATCCCTAATGCTGTGATACAGGCAGTGTTAACCAGGTCTGTCTGAGGGCTGGGAGATAACCAGCGGCGTCACAGTGGGCCGTGTTACGTCAGCACAGACGTTttctcattaagaaaaaaaaaaaagcagttaaaGGGTTTTTATGGGGTCCGTGTTGTGCGTTTGTGGATTTCTTATCTCGGATTAACCACTGTAGGGTGTCAAACGTGCTTTGTTGTTTGTCAAACAGCACATGTATGACGTAAACAGTCTTTAAGAAAAGACGCTGCAGGCGAATATTAAAAAAGTGGACAAAGTTTGCGTCATACTTCCACAGTTGTGAATTGCAAAATTTGCAGttcaaatatgcaaatgaggcactGCTTCATTAAACGCATGTTTCTAGCACAAAAATATGAATTTTGGATTAAGTTAGGTTTACAATACTGTTGTCGACACATTAGAATCTCTTTCATCAGTCCATAATTCAGAAAATTGTAAGAAAAGCCAGAAAGGAATTTCATTTTCACAATCGGTTGTacaattaaatattgtatataatcAGCCATATTATGAATGAACATATCCCTCTGTAAAAGccctttagaatttaaatatgaataaaactgtaaagTTTGGTGTATGCAATAAAAAATGAAGAGGTTTTgctc
>TCONS_00005113
TCCGAAATACTGCACACTGTACGCGTGGAGTGAGTGTGCGGTGATCAATATCGACAGTTTCGTGGCTCACGTGCTTCGAAGCTGATAGTGTATACTTTAGTGTCTTTGAAGGGAAGATGAGCGCGGATGTGGAGCGTGTGTTGATCCAGCTCCAGGATGAGGCCGGTGAGGTGCTCGGGTCTCCCTTTGATGTGCCGCTGGACATCAGTCCGGACAAACTGCAGCTGGTCTGCAATGCGCTCTTACAGAAGGAAGAGCCGGTGCCTTTCTTGTTCTTTGTGAAAGATGCAGAGCTGGTGTCGTCTCTGGGCTCCTGCATTCAGACATTGGGTCTGGAGACGGAGCAGGTGCTACCGGTGGTGTATCAGCCACAGGCTGTATTTCGTGTGCGGGCTGTGGCTCGGTGCACCAGCTCTCTGGAGGGCCACACTGAGGCCGTCATATCTGTGGCATTCAGCCCGACTGGAAAATATCTGGCCAGTGGATCTGGAGACACGACAGTGAGGTTTTGGGATCTGAGCACAGAAACACCACATCACACTTCTAGAGGACACACACACTGGGTTTTGTCCATTGCTTGGTCTCCAGATGGAAAGAAATTAGCATCAGGCTGCAAAAACAGTCAGattttcttgTGGGATCCAGTCACAGGCAAACAGATTGGAAAGACTTTGACAGGACATACAAAGTGGATCACCTGGCTGTGCTGGGAACCTCTCcatttAAACCCAGAGTGTCGCTATTTGGCAAGCACCAGTAAAGACTGTACGATTCGCATATGGGACACTGTTTTGGGTCACTATGACAAGATCCTAACaggacacacacactctgtgACGTGTGTGAAATGGGGAGGCGATGGTCTCCTCTACACATCATCTCAGGATAGGACTATTAAAGTCTGGAGAGCCAAAGATGGTGTTCAGTGTCGTACACTGCAAGGTCACGCTCACTGGGTGAACACACTGGCCCTCAGCACTGACTATGTCCTGCGTACAGGAGCATTTGAACCCGCGAACGCAACCATAAACCCTCAGGATCTCACCGGATCATTGGAAGAGATCAAGGAAAAGGCTTTGAAGCGCTACAACAGTGTCAGAGGTGAAGGTCATGAGAGGCTGGTTTCTGGATCAGACGACTTCACCATGTTCTTATGGAACCCAGCAGAGGACAAGAAGCCGGTCGCTCGTCTAACAGGTCACCAAGCATTGGTCAATGAGGTGCTCTTCTCACCCGACACACGACTCATAGCCAGCGCTTCCTTCGACAAGTCCATTAAGATCTGGGATGGAAAAACAGGAAAATATCTGAATTCACTGCGGGGCCACGTCGGGCCTGTGTACCAGGTGGCATGGTCAGCAGACAGTCGCCTGTTGGTCAGCGGCAGCAGTGACAGCACTCTGAAGGTGTGGGACATCAAAACGGGAAAACTGAACGCAGACCTGCCCGGCCATGCTGACGAGGTTTTTGCAGTCGACTGGAGTCCTGATGGACAGCGAGTGGCCAGCGGAGGGAAAGACAAATGTTTAAGGATATGGAGGAAGTAAACCAGAGAACCCAGCGGCCCTTGGCTCTACACACAACAGCCAATCAGGCGTCTAGAAGCGTCGCCCCCACAGGACAGTAAACAGCAGTGTCAGAGTATTAAGCCGTCACCTATTTGCCCAAAGAAAAACGGCTTCGACAGCATCACAAAAGCTGACATATAATGCTTTCTGATGCCTGATAGCAGGAAGATAAAACGGCCGATACTCCAACTCAAATGAGCAGTTGCCCTGTAGAAGTGCCACCGAACTGACCCACTCTAATCTGTGTaatctttctcacacacacattctttgTAATTAACTTAATCCCTAATGCTGTGATACAGGCAGTGTTAACCAGGTCTGTCTGAGGGCTGGGAGATAACCAGCGGCGTCACAGTGGGCCGTGTTACGTCAGCACAGACGTTttctcattaagaaaaaaaaaaaagca

Function

symbol description
nle1 Predicted to be involved in Notch signaling pathway and ribosomal large subunit assembly. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in alar plate midbrain region; nervous system; optic vesicle; and pharyngeal arch. Orthologous to human NLE1 (notchless homolog 1).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050522-321 Predicted to be involved in Notch signaling pathway and ribosomal large subunit assembly. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in alar plate midbrain region; nervous system; optic vesicle; and pharyngeal arch. Orthologous to human NLE1 (notchless homolog 1).

Ensembl:

ensembl_id ENSDARG00000057105

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005111 False 2587 mRNA 0.46 12 23070741 23099809
TCONS_00005112 False 2477 mRNA 0.47 13 23070752 23099869
TCONS_00005113 True 1980 mRNA 0.51 13 23071274 23099851

Neighbor

gene id symbol gene type direction distance location
XLOC_002758 FP102052.1 coding downstream 100018 22960380 ~ 22970723 (-)
XLOC_002757 rnasekb coding downstream 152527 22916113 ~ 22918214 (-)
XLOC_002756 si:ch1073-143l10.2 coding downstream 158486 22907351 ~ 22912255 (-)
XLOC_002755 and3 coding downstream 215983 22848556 ~ 22854758 (-)
XLOC_002754 vamp2 coding downstream 225256 22838364 ~ 22845485 (-)
XLOC_002760 cadm2a coding upstream 116809 23216678 ~ 23379146 (-)
XLOC_002761 NA coding upstream 413253 23513122 ~ 23519215 (-)
XLOC_002762 NA coding upstream 418192 23518061 ~ 23520243 (-)
XLOC_002763 NA coding upstream 449107 23548976 ~ 23549882 (-)
XLOC_002764 NA coding upstream 680673 23780542 ~ 24049205 (-)
XLOC_002751 AL807389.3 non-coding downstream 318393 22752232 ~ 22752348 (-)
XLOC_002750 NA non-coding downstream 463026 22604273 ~ 22607715 (-)
XLOC_002749 NA non-coding downstream 503533 22554349 ~ 22567208 (-)
XLOC_002748 NA non-coding downstream 535817 22530785 ~ 22534924 (-)
XLOC_002745 NA non-coding downstream 579283 22481158 ~ 22491458 (-)
XLOC_002768 CU467963.2 non-coding upstream 1283397 24383266 ~ 24383381 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_10284509_10291314 NLE1, NLE1.S coding CI01000304 null 10284509 ~ 10291314 (-)
bowfin (Amia calva) AMCG00005530 nle1,LOC107720672 coding CM030142.1 CM030142.1 2202429 ~ 2209490 (+)