XLOC_027596 (BX950868.1)


Basic Information

Item Value
gene id XLOC_027596
gene name BX950868.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39669246 ~ 39669933 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00054135
acaccaacttgtttcaagtagcgcaacagctctgggaaatcagttcaatttagccatgcctagctggagctcctccacaaagaaagagacctccttaataccagcttaggaagcactcccaccttcctgtcaaccacagttctgtctctatttgagcacacctcaaggcatttgaagtcttctccttacggcagccagctgcgatgcatttaagcacctgattacaagggtgttcttgctaaaaggagcaatggcagagagagacttccagtgcagactttaagatgctgcaatctaatcgtggaaaagacacttgctcctgagcagattcaagcttggggatgtgttgctgtcacaccaacgagtctgccgtgagtttcaaagaacacattatactgactagttgacgacttaaatttactctctcacttccagcgttcactgcgaaCGCGCACACATTAAAGCCGTTTGGctgtgtttaaaaccacatctggcagcggtgggattcgaacccacgcccccgaagagactggagcctaaatccagcgc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100699

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00054135 True 549 lncRNA 0.48 2 39669246 39669933

Neighbor

gene id symbol gene type direction distance location
XLOC_027594 NA coding upstream 31601 39561827 ~ 39637645 (+)
XLOC_027595 BX950868.3 coding upstream 92356 39576200 ~ 39576890 (+)
XLOC_027593 BX548067.2 coding upstream 185740 39482550 ~ 39483506 (+)
XLOC_027592 si:dkey-261o4.1 coding upstream 298575 39368978 ~ 39370671 (+)
XLOC_027591 NA coding upstream 410612 39257840 ~ 39258634 (+)
XLOC_027597 CR749167.2 coding downstream 72186 39742119 ~ 39747002 (+)
XLOC_027598 si:dkeyp-4c4.1 coding downstream 79520 39749453 ~ 39786864 (+)
XLOC_027599 NA coding downstream 170928 39840861 ~ 40073035 (+)
XLOC_027600 NA coding downstream 319602 39989535 ~ 39990364 (+)
XLOC_027601 si:dkey-199k11.6 coding downstream 348507 40018440 ~ 40021496 (+)
XLOC_027589 NA non-coding upstream 582676 39085517 ~ 39086570 (+)
XLOC_027602 NA non-coding downstream 352340 40022273 ~ 40023969 (+)
XLOC_027605 NA non-coding downstream 395779 40065712 ~ 40066877 (+)
XLOC_027608 NA non-coding downstream 597997 40267930 ~ 40268776 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnal-aag-66 NA coding NC_048585.1 CM023239.2 39158927 ~ 39159008 (-)
eurasian perch (Perca fluviatilis) trnal-aag_11 NA coding NC_053132.1 CM020929.1 12610821 ~ 12610902 (+)
striped catfish (Pangasianodon hypophthalmus) trnal-aag_11 NA coding NC_047612.1 CM018558.1 7593727 ~ 7593808 (-)
tiger barb (Puntius tetrazona) trnal-aag_73 NA coding NW_025047962.1 JAEQBD010000307.1 72419 ~ 72500 (+)
tiger barb (Puntius tetrazona) trnaa-ugc_57 NA coding NC_056704.1 CM032073.1 13444011 ~ 13444082 (-)
mexican tetra (Astyanax mexicanus) trnal-aag_11 NA coding NW_019172914.1 APWO02000140.1 924948 ~ 925029 (+)
mexican tetra (Astyanax mexicanus) trnal-uag_11 NA coding NW_019172914.1 APWO02000140.1 930898 ~ 930979 (+)