LOC110534772 (LOC106610471)


Basic Information

Item Value
gene id LOC110534772
gene name LOC106610471
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73141140 ~ 73147819 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933927.1
GTAGGATTTAGACGTTCCTGTCTCTGGTtaacactccagtccagttggtggcggtaatgcaccttaaatagtccaatgaagaagaagaaaacgaAAGTAGTTATTTCTCAGAAGAACCACCGCTCTAGGAAAAACATCTATAGTTTGATGTTGAATCCTGGGGCAGTAGAGCACAGCATGGGTTGGAAACTCTTCTACTGTGTTTTTACATTGATGGTTGGCCTTCTTGAATGCCCCTCGATTGGTAATGGTATCATTATCAAAACTGTGAATTTGAAGGACTCTGTCACTCTCCCTTGCAATGCAAACTGTGACATTGGCATCGTTTGGAGGATTGTGGATGGCCAGGTCGTTGCCAAGACTGATCAAGGAAAATTAATTGAAGGAAAGCGCTTTGAGAAGAGGGTGGAAATCAACAAAGACCTCTCTCTCACAATCAGCTCTGCGGTGTACAATGACAAGGGCTCATATGAGTGTATCTGTGATAATCAGATTGTTGCAGATGTGAAGCTAGATGTTCTGGTCCCGACAGAAATATCAGCTCACGTCGGAGATAATGTCACACTTCACTGCTATGGCTCAACCAGTAAGCAGGCAACCGATGGTGAGATTTATGTCCAGTGGGAGAAACATGGACAGACTGTGCTGAAGATTGACCCGACCAATACTACCTTTGGCCCTGGATTCATTGACAGGACATCAGTGACCAGGGATGGTTACGGAGAGGGTGACCTGTCCCTCACCTTCACCGGTGTACGCTCGTCTGACCAGGGGACCTACCTGTGCTTCTTCAACCGGGATAGTGACCCAGGATATCCACATGGAGTCACTCTCACTGTTAAAGaAAAGCAATTGGAGCCTGCAATGACTGATAGTGAaaggagtagggtgccattgATAGTAATAATTATTCTACTTCTGTTTATCATTTGTGTGCTCGGGTTAATGGTGATTCCCAAGAGAAACAGGAGACAGCCAACAGTGGACTTCACAGTCACTGGAAAAGAGGACAACACAGCATCACCAGCACATCTCTCCATCGAGGATCTTCCTGTTTCAGTTCAGGACAGCCAACCGTTGCCAGAGGTCCGAAGAATCCAGAGTTGTTCTGATGATCATCTTGATGAGACCACGTGTCCTGAGGGGATGGATGAAcacacagaggaagaggaggagctccATCTCTCAGTAGCTGAAAGTGGGACACTGCTAGACCAGGAGAAGAGTAGCACAGGGAGTTGAGTTATGTATGAAGGTAGTATGTTCTGGTTGCCAACTTCTTTGTTGTCGTGAAATGTTGGATGAAATGTGCTATGTTCACTGAAGTGGATGTGGATGTCTTCCTATCATAGTTTACTGTATGAATCGGTAGCCAATGACTGTAGCTTGATGGGCTTGAATCAAATGATACAGGGTTTATTTTATCTAGGGCCCAGTCTTTGCTGATGTCCTGTCTAGTCTTCCAGCCTCACTGGTGGCTTAAATTGTTTAAAGCTAGAGATTTTACACCAGCATAAGCATTTTATTGgggggtgagaggtataaaggaGGATCCTTTGAGTGTGTGGATAGGAAAGGGAAGCAGGTAGGGTATAAAGGAGGATCCTTTGAGTGTGTGGATATGAAAGGGAGCTGGTAGGGTCTAAAGGAGGAATCATTCATCTCTCTGGTGGTGGTGCTACTGATATTGTAACTGGAAGGTTTACTAGTCAAGATCAATGTCACATTTAATCTGGCCTTGCTTGATATCAAAGGGGATATCACAGTACGTGTAATACACAATATCCTCACAAGAGGGCAGACGTACACCATCATTTTAAAGTAAACTATGATTATTTTTGGGTCAGTGATAcacttgggacgtccctaccctaaaTCCTAACCTTAATCCACAAGCAATACTTTAATCCTTACATTAACTATTTTATATTTCAACTTCTGTGGGGTAGGCACGTCCCAAGGATCCTCGATAACAGATTCATGTATTATTATAACCTATTACATGATGCGTAATAAATATATGTATTTGCTAAATGATTATAAAGAATGTTTGCTATATTTACGTTTATTTTATCAAATGTAAGAAATATTATTGTTCACAAAGTGTAAA
>XM_036933928.1
CCCAGCAATGTTTTCATGCAGTTCTGTTTACACAATGGAGATGTCCATACTATTGGCTGCAGAGTGGGCGGAGGAGAATGCCCCTCGATTGGTAATGGTATCATTATCAAAACTGTGAATTTGAAGGACTCTGTCACTCTCCCTTGCAATGCAAACTGTGACATTGGCATCGTTTGGAGGATTGTGGATGGCCAGGTCGTTGCCAAGACTGATCAAGGAAAATTAATTGAAGGAAAGCGCTTTGAGAAGAGGGTGGAAATCAACAAAGACCTCTCTCTCACAATCAGCTCTGCGGTGTACAATGACAAGGGCTCATATGAGTGTATCTGTGATAATCAGATTGTTGCAGATGTGAAGCTAGATGTTCTGGTCCCGACAGAAATATCAGCTCACGTCGGAGATAATGTCACACTTCACTGCTATGGCTCAACCAGTAAGCAGGCAACCGATGGTGAGATTTATGTCCAGTGGGAGAAACATGGACAGACTGTGCTGAAGATTGACCCGACCAATACTACCTTTGGCCCTGGATTCATTGACAGGACATCAGTGACCAGGGATGGTTACGGAGAGGGTGACCTGTCCCTCACCTTCACCGGTGTACGCTCGTCTGACCAGGGGACCTACCTGTGCTTCTTCAACCGGGATAGTGACCCAGGATATCCACATGGAGTCACTCTCACTGTTAAAGaAAAGCAATTGGAGCCTGCAATGACTGATAGTGAaaggagtagggtgccattgATAGTAATAATTATTCTACTTCTGTTTATCATTTGTGTGCTCGGGTTAATGGTGATTCCCAAGAGAAACAGGAGACAGCCAACAGTGGACTTCACAGTCACTGGAAAAGAGGACAACACAGCATCACCAGCACATCTCTCCATCGAGGATCTTCCTGTTTCAGTTCAGGACAGCCAACCGTTGCCAGAGGTCCGAAGAATCCAGAGTTGTTCTGATGATCATCTTGATGAGACCACGTGTCCTGAGGGGATGGATGAAcacacagaggaagaggaggagctccATCTCTCAGTAGCTGAAAGTGGGACACTGCTAGACCAGGAGAAGAGTAGCACAGGGAGTTGAGTTATGTATGAAGGTAGTATGTTCTGGTTGCCAACTTCTTTGTTGTCGTGAAATGTTGGATGAAATGTGCTATGTTCACTGAAGTGGATGTGGATGTCTTCCTATCATAGTTTACTGTATGAATCGGTAGCCAATGACTGTAGCTTGATGGGCTTGAATCAAATGATACAGGGTTTATTTTATCTAGGGCCCAGTCTTTGCTGATGTCCTGTCTAGTCTTCCAGCCTCACTGGTGGCTTAAATTGTTTAAAGCTAGAGATTTTACACCAGCATAAGCATTTTATTGgggggtgagaggtataaaggaGGATCCTTTGAGTGTGTGGATAGGAAAGGGAAGCAGGTAGGGTATAAAGGAGGATCCTTTGAGTGTGTGGATATGAAAGGGAGCTGGTAGGGTCTAAAGGAGGAATCATTCATCTCTCTGGTGGTGGTGCTACTGATATTGTAACTGGAAGGTTTACTAGTCAAGATCAATGTCACATTTAATCTGGCCTTGCTTGATATCAAAGGGGATATCACAGTACGTGTAATACACAATATCCTCACAAGAGGGCAGACGTACACCATCATTTTAAAGTAAACTATGATTATTTTTGGGTCAGTGATAcacttgggacgtccctaccctaaaTCCTAACCTTAATCCACAAGCAATACTTTAATCCTTACATTAACTATTTTATATTTCAACTTCTGTGGGGTAGGCACGTCCCAAGGATCCTCGATAACAGATTCATGTATTATTATAACCTATTACATGATGCGTAATAAATATATGTATTTGCTAAATGATTATAAAGAATGTTTGCTATATTTACGTTTATTTTATCAAATGTAAGAAATATTATTGTTCACAAAGTGTAAA
>XM_036933926.1
aggaagagggggtcagtcttatggctgggtATGGATCTAAGGACCCTAAAACAGGCAGGACAGGAACAGCTTTTAGAGTTTAAGGTGGCAGTGACGAAAAGAGCAACAGGTCATTTATCTGTTTACACAATGGAGATGTCCATACTATTGGCTGCAGAGTGGGCGGAGGAGATGTTGAATCCTGGGGCAGTAGAGCACAGCATGGGTTGGAAACTCTTCTACTGTGTTTTTACATTGATGGTTGGCCTTCTTGAATGCCCCTCGATTGGTAATGGTATCATTATCAAAACTGTGAATTTGAAGGACTCTGTCACTCTCCCTTGCAATGCAAACTGTGACATTGGCATCGTTTGGAGGATTGTGGATGGCCAGGTCGTTGCCAAGACTGATCAAGGAAAATTAATTGAAGGAAAGCGCTTTGAGAAGAGGGTGGAAATCAACAAAGACCTCTCTCTCACAATCAGCTCTGCGGTGTACAATGACAAGGGCTCATATGAGTGTATCTGTGATAATCAGATTGTTGCAGATGTGAAGCTAGATGTTCTGGTCCCGACAGAAATATCAGCTCACGTCGGAGATAATGTCACACTTCACTGCTATGGCTCAACCAGTAAGCAGGCAACCGATGGTGAGATTTATGTCCAGTGGGAGAAACATGGACAGACTGTGCTGAAGATTGACCCGACCAATACTACCTTTGGCCCTGGATTCATTGACAGGACATCAGTGACCAGGGATGGTTACGGAGAGGGTGACCTGTCCCTCACCTTCACCGGTGTACGCTCGTCTGACCAGGGGACCTACCTGTGCTTCTTCAACCGGGATAGTGACCCAGGATATCCACATGGAGTCACTCTCACTGTTAAAGaAAAGCAATTGGAGCCTGCAATGACTGATAGTGAaaggagtagggtgccattgATAGTAATAATTATTCTACTTCTGTTTATCATTTGTGTGCTCGGGTTAATGGTGATTCCCAAGAGAAACAGGAGACAGCCAACAGTGGACTTCACAGTCACTGGAAAAGAGGACAACACAGCATCACCAGCACATCTCTCCATCGAGGATCTTCCTGTTTCAGTTCAGGACAGCCAACCGTTGCCAGAGGTCCGAAGAATCCAGAGTTGTTCTGATGATCATCTTGATGAGACCACGTGTCCTGAGGGGATGGATGAAcacacagaggaagaggaggagctccATCTCTCAGTAGCTGAAAGTGGGACACTGCTAGACCAGGAGAAGAGTAGCACAGGGAGTTGAGTTATGTATGAAGGTAGTATGTTCTGGTTGCCAACTTCTTTGTTGTCGTGAAATGTTGGATGAAATGTGCTATGTTCACTGAAGTGGATGTGGATGTCTTCCTATCATAGTTTACTGTATGAATCGGTAGCCAATGACTGTAGCTTGATGGGCTTGAATCAAATGATACAGGGTTTATTTTATCTAGGGCCCAGTCTTTGCTGATGTCCTGTCTAGTCTTCCAGCCTCACTGGTGGCTTAAATTGTTTAAAGCTAGAGATTTTACACCAGCATAAGCATTTTATTGgggggtgagaggtataaaggaGGATCCTTTGAGTGTGTGGATAGGAAAGGGAAGCAGGTAGGGTATAAAGGAGGATCCTTTGAGTGTGTGGATATGAAAGGGAGCTGGTAGGGTCTAAAGGAGGAATCATTCATCTCTCTGGTGGTGGTGCTACTGATATTGTAACTGGAAGGTTTACTAGTCAAGATCAATGTCACATTTAATCTGGCCTTGCTTGATATCAAAGGGGATATCACAGTACGTGTAATACACAATATCCTCACAAGAGGGCAGACGTACACCATCATTTTAAAGTAAACTATGATTATTTTTGGGTCAGTGATAcacttgggacgtccctaccctaaaTCCTAACCTTAATCCACAAGCAATACTTTAATCCTTACATTAACTATTTTATATTTCAACTTCTGTGGGGTAGGCACGTCCCAAGGATCCTCGATAACAGATTCATGTATTATTATAACCTATTACATGATGCGTAATAAATATATGTATTTGCTAAATGATTATAAAGAATGTTTGCTATATTTACGTTTATTTTATCAAATGTAAGAAATATTATTGTTCACAAAGTGTAAA

Function

NR:

description
uncharacterized protein LOC110534770

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933927.1 False 2110 mRNA 0.43 5 73141140 73146423
XM_036933928.1 False 1957 mRNA 0.43 5 73141140 73147671
XM_036933926.1 True 2134 mRNA 0.43 6 73141140 73147819

Neighbor

gene id symbol gene type direction distance location
LOC110533210 LOC106602234 coding downstream 5564 73099933 ~ 73135576 (-)
trnae-cuc-164 NA coding downstream 46074 73094995 ~ 73095066 (-)
trnae-cuc-163 NA coding downstream 47297 73093772 ~ 73093843 (-)
trnae-cuc-162 NA coding downstream 47478 73093591 ~ 73093662 (-)
trnae-cuc-161 NA coding downstream 47659 73093410 ~ 73093481 (-)
LOC110534743 LOC106602231 coding upstream 7294 73155113 ~ 73309871 (-)
LOC110534807 NA coding upstream 172951 73320770 ~ 73348165 (-)
LOC110533212 LOC106597917 coding upstream 198116 73345935 ~ 73347899 (-)
LOC118936751 NA coding upstream 213364 73360951 ~ 73363500 (-)
LOC110534783 LOC106610423 coding upstream 222485 73370304 ~ 73373578 (-)
G923370 NA non-coding downstream 47508 73093250 ~ 73093632 (-)
trnae-cuc-157 NA non-coding downstream 49467 73091418 ~ 73091714 (-)
G923368 NA non-coding downstream 51301 73089622 ~ 73089839 (-)
G923366 NA non-coding downstream 61021 73079919 ~ 73080119 (-)
G923509 NA non-coding upstream 2760 73150579 ~ 73150805 (-)
G923514 NA non-coding upstream 22575 73170394 ~ 73171714 (-)
G923516 NA non-coding upstream 27882 73175701 ~ 73176299 (-)
G923517 NA non-coding upstream 29637 73177456 ~ 73177686 (-)
G923518 NA non-coding upstream 31000 73178819 ~ 73179049 (-)
G923192 LOC106610383 other downstream 215406 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 1377220 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1393256 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1478006 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 1543995 71595152 ~ 71597145 (-)
G924041 NA other upstream 482323 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 1769358 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 1790086 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 1905297 75053116 ~ 75056174 (-)
G925211 NA other upstream 2136172 75283991 ~ 75284673 (-)

Expression


Co-expression Network