LOC110533212 (LOC106597917)


Basic Information

Item Value
gene id LOC110533212
gene name LOC106597917
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73345935 ~ 73347899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034227.1
TCTGGAGTTGCTGCAGTGTttctggggctgctgtgtgttctcctactggctgggatcataggcctgtctgtctactATAACAGAGCCATTAAAGATTCTGAGGATAAAAGGAACATCTTGTCCCAGAGTTTCTCCCTTTATAAAATCAACACAACttcagagagagaccagctacagaccagatacaacaacctgactgaagaGAAAGGCCATATTCAAGCCAAGCTTTTTGTGATAGAGCAGCATTGTCAGGAGGGATGGAGATACTCTGACTCCAGTTTGTACTTCCTGTCTACTGAGAAGAAAACCTGGGAGGAGAGCAGACAGGACTGTCTGGGgagaggagcagacctggtgatcataaacagcagagaggaacagACATTTGTCTTCAACCTCCACCTGAGTGcctggattggtctgactgactctgttactgaGGGGATCTGGAAGTGGGTGGATGGCACAACACTGACCACAGGGTACTGGTGGAAAGGACAGCCTGATAATTATGGGCAGGAGGACTGTGCTGAGATAAACTTTAGTAAAGGTGACCCTGTAACAACATGGAATGATGACAAATGTGGCGCAAATAACAGCTGGATCTGTGAGAAAGTGGTGTAACAAtccctctcgctctatctctctctcatatacagtgtatatatattgattgttggATACAGtgctgaatggttaagtgatgattCCACCTGGTGGTTAAAGTGAGGGATGAACTCACCAAAAAGTTGTATTACAGAGTTGCCTACGGGCTCTTTTTTAATGAGACCTTACTCAATTCctcctcacaccctctctcttcgACTCCTTCTCCAAACACATTAGAGAATACAATCCTAGGGGAGGGACCTTGGACCTTCTCCTCTAATAGGgttgagaaggaggggaggagataggaggagaagagacaagaggagaggaatcTAGGCTAATTGAGATAGAGCcttagtgtcagagagagaggaggaagaagaacattaagagaatgaggaagagaaaAAGTGATTGTTGTGTTTAGATTTAGAGGAGaatatgtagacatactgtactCTGTAAAATGCTTCTTCCTTATTTGTATTAGAAACATGTCATGTGATTTGCAGTAGGCTTATGcttagta

Function

NR:

description
CD209 antigen-like protein E

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034227.1 True 1141 mRNA 0.44 5 73345935 73347899

Neighbor

gene id symbol gene type direction distance location
LOC110534743 LOC106602231 coding downstream 36064 73155113 ~ 73309871 (-)
LOC110534772 LOC106610471 coding downstream 198116 73141140 ~ 73147819 (-)
LOC110533210 LOC106602234 coding downstream 210359 73099933 ~ 73135576 (-)
trnae-cuc-164 NA coding downstream 250869 73094995 ~ 73095066 (-)
trnae-cuc-163 NA coding downstream 252092 73093772 ~ 73093843 (-)
LOC118936751 NA coding upstream 13284 73360951 ~ 73363500 (-)
LOC110534783 LOC106610423 coding upstream 22405 73370304 ~ 73373578 (-)
LOC110534778 LOC106610446 coding upstream 96054 73443953 ~ 73446889 (-)
LOC110534518 NA coding upstream 105546 73453445 ~ 73456726 (-)
LOC118936758 LOC106610424 coding upstream 115589 73463414 ~ 73466195 (-)
G923948 NA non-coding downstream 10846 73334110 ~ 73335089 (-)
G923570 NA non-coding downstream 51954 73293736 ~ 73293981 (-)
G923564 NA non-coding downstream 68344 73274217 ~ 73277591 (-)
G923559 NA non-coding downstream 78834 73266884 ~ 73267101 (-)
G923555 NA non-coding downstream 84231 73261140 ~ 73261704 (-)
G923970 NA non-coding upstream 41314 73389213 ~ 73389529 (-)
G923972 NA non-coding upstream 43434 73391333 ~ 73400251 (-)
G923977 NA non-coding upstream 57518 73405417 ~ 73667929 (-)
G923979 NA non-coding upstream 64463 73412362 ~ 73412838 (-)
G923192 LOC106610383 other downstream 420201 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 1582015 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1598051 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1682801 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 1748790 71595152 ~ 71597145 (-)
G924041 NA other upstream 282243 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 1569278 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 1590006 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 1705217 75053116 ~ 75056174 (-)
G925211 NA other upstream 1936092 75283991 ~ 75284673 (-)

Expression


Co-expression Network