LOC118936758 (LOC106610424)


Basic Information

Item Value
gene id LOC118936758
gene name LOC106610424
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73463414 ~ 73466195 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933952.1
TACTTAATCATACTTACTCATTAATGGTGTTTTAGTTACATGTTTGATGAACTTTTCCCTTTTACAGATGGAGCCATTGATCATCACAAGTCAACACAgatagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactgaagagagagaccagctacagaccagttacaacaccctgactgaAGAGAGAAACCAGCTACAGACAAgtaacaacaacctgactaaagagagagaccatctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagcttaCCAATTGTAAACAAACCTGTCCTGAAGGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACTGAGACTAAAACCTGGAAGGAGAGCAGACAGGACTGTTTgaagagaggagcagacctggtgatcATAAACAGTGATAtggaacagGAGTTTCTCTTCAAACTCAAGAAGAGAgtctggattggtctgactgactctgttagTGAGGGGACTTGGAAATGGGTGGACGGCACcccactgaccaacccaaggtactggaatGACCATCAGCCTGATAGTGGAGATCCTAGtggggaggaggactgtgttgagatacataaagattggATCTTTCCACTTAAGGCATGGAATGACATGCCATGTGACTGGAAACTCAACTGGATTTGTGAGAAAGTGGTTTAACATCATCCTGACAACATACTGTAGCCTGCAGTGCACACAACttcctccttcattctctctctctctcacacacacacagatagagccTCTGTCTTGATCTCGCTCACACACTCTGCCTCAATCCCAAACACACCCTTACACAGATtttcacacacacgcaagcacacatgcatacacgtacacacacacacatgcaaatgcACCTATTATTGTATTTGTTTGTAGTATCTTATTGATAAAAGTCCTACTTATTTCCTGATTGT
>TU1050916
ATCACAAGTCAACACAgatagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactgaagagagagaccagctacagaccagttacaacaccctgactgaAGAGAGAAACCAGCTACAGACAAgtaacaacaacctgactaaagagagagaccatctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagcttaCCAATTGTAAACAAACCTGTCCTGAAGGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACTGAGACTAAAACCTGGAAGGAGAGCAGACAGGACTGTTTgaagagaggagcagacctggtgatcATAAACAGTGATAtggaacagGAGTTTCTCTTCAAACTCAAGAAGAGAgtctggattggtctgactgactctgttagTGAGGGGACTTGGAAATGGGTGGACGGCACcccactgaccaacccaaggtactggaatGACCATCAGCCTGATAGTGGAGATCCTAGtggggaggaggactgtgttgagatacataaagattggATCTTTCCACTTAAGGCATGGAATGACATGCCATGTGACTGGAAACTCAACTGGATTTGTGAGAAAGTGGTTTAACATCATCCTGACAACATACTGTAGCCTGCAGTGCACACAACttcctccttcattctctctctctctcacacacacacagatagagccTCTGTCTTGATCTCGCTCACACACTCTGCCTCAATCCCAAACACACCCTTACACAGATtttcacacacacgcaagcacacatgcatacacgtacacacacacacatgcaaatgcACCTATTATTGTATTTGTTTGTAGTATCTTATTGATAAAAGTCCTACTTATTTCCTGATTGTACCTTCCTGTGTACTATTAATTTTGTTTCACACGTCATCAGATATAATTTGAAATTAGTACAGTTGACAAAAAC

Function

NR:

description
CD209 antigen-like protein C, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933952.1 False 1034 mRNA 0.44 4 73463488 73466195
TU1050916 True 1026 lncRNA 0.44 4 73463414 73466113

Neighbor

gene id symbol gene type direction distance location
LOC110534518 NA coding downstream 6762 73453445 ~ 73456726 (-)
LOC110534778 LOC106610446 coding downstream 16599 73443953 ~ 73446889 (-)
LOC110534783 LOC106610423 coding downstream 89910 73370304 ~ 73373578 (-)
LOC118936751 NA coding downstream 100988 73360951 ~ 73363500 (-)
LOC110534807 NA coding downstream 115323 73320770 ~ 73348165 (-)
LOC118936757 NA coding upstream 31450 73497645 ~ 73502828 (-)
LOC118936759 LOC106597675 coding upstream 56629 73522824 ~ 73524086 (-)
LOC118936756 NA coding upstream 85870 73552065 ~ 73556782 (-)
LOC118966650 NA coding upstream 100649 73566844 ~ 73569454 (-)
LOC110534806 LOC106610423 coding upstream 109768 73575963 ~ 73579425 (-)
G923995 NA non-coding downstream 24484 73438687 ~ 73439004 (-)
G923981 NA non-coding downstream 47871 73415208 ~ 73415617 (-)
G923979 NA non-coding downstream 50650 73412362 ~ 73412838 (-)
G923972 NA non-coding downstream 63237 73391333 ~ 73400251 (-)
G923970 NA non-coding downstream 73959 73389213 ~ 73389529 (-)
G924003 NA non-coding upstream 1118 73467313 ~ 73467641 (-)
G924015 NA non-coding upstream 39908 73506103 ~ 73510193 (-)
G923957 NA non-coding upstream 44553 73510748 ~ 73514124 (-)
G924048 NA non-coding upstream 193509 73659704 ~ 73664391 (-)
G924057 NA non-coding upstream 221320 73687515 ~ 73735066 (-)
G923192 LOC106610383 other downstream 537754 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 1699568 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1715604 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1800354 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 1866343 71595152 ~ 71597145 (-)
G924041 NA other upstream 163947 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 1450982 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 1471710 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 1586921 75053116 ~ 75056174 (-)
G925211 NA other upstream 1817796 75283991 ~ 75284673 (-)

Expression


Co-expression Network