LOC118936759 (LOC106597675)


Basic Information

Item Value
gene id LOC118936759
gene name LOC106597675
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73522824 ~ 73524086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933954.1
GAGTCATGAACGATTCTGAAGATAAAAGGAACAACTTGTTTCAGAGTTTCTCCCTTTATAAAATCAACGcaactgcagagagagaccagctacagaccagatacaacaacctgactgaagaGAAAGGTCATATTCAGGCAAAGCTTTTTGTGATAGAGCAGCATTGTCAGGAGGGATGGAGATACTTTGACTACAAGTTCTACTTCCTGTCTACTGAGAAGAAAACCTGGGAGGAGAGCAGACAGgactgtctggagagaggagcagacctggtgatcataaacagcagagaggaacagACATTTGTCTTCAACCTCCACCTGAGAGCCTGGATTGGTCTAAGTGACTCTGTTACTGAGGGGACCTGGAAGTGGGTGGACGGCACCCCACTGACCACAGGGTACTGGGGGAAAGGACAGCCTGATGATAGAGGGCAAGAGGACTGTGCTGAGATATACTATGGACAAGATGACCCTGTAAAGACATGGAATGATGACAAATGTGGCACAAATCATAACTGGATCTGTGAGAAAGTGGTGTAACAATAACCCACAGTAACAaacagtctctgtctctcgctctgttaTTGTTATGTTGATGGTTGAATACAGTACTTTGATGCGGAATTTAATCCCAGTGCAGGAACACCAACGGGCGGAAATTTCAGAACGCCAACTATAGTtttcgataaaactcaaactttcattaaaacacacatgcaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K06563 CLEC4M, DC-SIGN2, CD209, CD299; C-type lectin domain family 4 member M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933954.1 True 722 mRNA 0.44 4 73522824 73524086

Neighbor

gene id symbol gene type direction distance location
LOC118936757 NA coding downstream 19996 73497645 ~ 73502828 (-)
LOC118936758 LOC106610424 coding downstream 56629 73463414 ~ 73466195 (-)
LOC110534518 NA coding downstream 66098 73453445 ~ 73456726 (-)
LOC110534778 LOC106610446 coding downstream 75935 73443953 ~ 73446889 (-)
LOC110534783 LOC106610423 coding downstream 149246 73370304 ~ 73373578 (-)
LOC118936756 NA coding upstream 27979 73552065 ~ 73556782 (-)
LOC118966650 NA coding upstream 42758 73566844 ~ 73569454 (-)
LOC110534806 LOC106610423 coding upstream 51877 73575963 ~ 73579425 (-)
LOC118936371 LOC106610446 coding upstream 125043 73649129 ~ 73652039 (-)
LOC118966651 LOC106610443 coding upstream 134420 73658506 ~ 73668256 (-)
G923957 NA non-coding downstream 8700 73510748 ~ 73514124 (-)
G924015 NA non-coding downstream 12631 73506103 ~ 73510193 (-)
G923944 NA non-coding downstream 54999 73464388 ~ 73467825 (-)
G924003 NA non-coding downstream 55183 73467313 ~ 73467641 (-)
G924048 NA non-coding upstream 135618 73659704 ~ 73664391 (-)
G924057 NA non-coding upstream 163429 73687515 ~ 73735066 (-)
G924096 NA non-coding upstream 284705 73808791 ~ 73844962 (-)
G924113 NA non-coding upstream 320025 73844111 ~ 73844396 (-)
G924151 NA non-coding upstream 397648 73921734 ~ 73932186 (-)
G923192 LOC106610383 other downstream 597090 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 1758904 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1774940 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1859690 71658344 ~ 71665901 (-)
LOC118936934 LOC106597769 other downstream 1925679 71595152 ~ 71597145 (-)
G924041 NA other upstream 106056 73630142 ~ 73631970 (-)
LOC110517287 LOC106601385 other upstream 1393091 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 1413819 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 1529030 75053116 ~ 75056174 (-)
G925211 NA other upstream 1759905 75283991 ~ 75284673 (-)

Expression


Co-expression Network