LOC118936371 (LOC106610446)


Basic Information

Item Value
gene id LOC118936371
gene name LOC106610446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73649129 ~ 73652039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933944.1
acacacacacacacacacacaatatattaaACAGGTGAGATTACCCAGTATTTCTATACCTTTATTTTTCCCAATCCTAGATGATACAGTAATACACATTACTAAAGATCTTACTTTAATAATGTGTTATTCAGTGCATGTTCAGTGGTGGAAGAGACCCTCTGGAGttgctgcagtgtgtctggggctgctgtgtgttctaATAATCTTTGACAGTCAGTCTTTGTTGTCAAGTTACATATAAACACAACATCAAATGCTCATGTTTGACTGTTACATATGATATTTAATTTATGTTAACAGTTAGCCTTTTTTCTTCACTTCCCCTCTATGATCTATATCTTCCTGGTATGAGGGTGTCCTGTCCATCATCACAAATAGCAAGTCCTGTTCCCTGAgcaggaggactgtgttgagatATACTCTGGACAAGATGACCATGTAGAGACATGACATGGTTTAAAATGTGCCGCAGAAAATGCTTTCACAATAACCACTGTAACAATCTCTGACACAACTACGCACACAACTAAGCACACACATTTTCAAACTTGTAAACATTTTTGTGTTAGCATAGCCACAACTTCCCGTGTAATTTTGTTGATACTTCCCTAGAGTTAACAGCTACAGcagtgacacagacagagacacacagatgactcagagacagagacatcacTAGAAGCAGAGACTTAACGTATAGAGGTCTTACAGTTGACGTACGACGCCTCCTGGtggccatgttggaagaccaccACATTAATTCTAGAAGCAGAGACTTCATGTATAGTAGACCTACACAGAAAGAAAGACCCAGGCATTGTTAAAGATGTCAAAGGTCATCTATACTGAACCAGATATGAACAAGAAGGTCAAGTTTGAcaggtgagatggaggagaggattgtGGATATCTACGTCAGTGCAGACACCCTGAGAGACGGTGAGACCATCaccaagagagaagagacagcagacACTGCTCCAAATAATGGACCAGGAGACCAGCActcagATAACAGAGCCATCAAAGATTCTGAGGATAAAAGGAACAACTTGTCACAGAGTTGTTCCCTTTATAAGACTAACGcaactgcagagagagaccagctacagaccagatacaacaacctgactgaagagagagaccagctacagaccagatacaacaacctgactgaagaGAAAGGCCATATTCAGCTAAAGCTTTTTGTGATAGAGCAGCATTGTCAGGAGGGATGGAGATACTTTGACTCCAGTTTGTACTTCCTGTCTACTGAGACCAAAACCTGGGAGAAGAGCAGACAGgactgtcaggggagaggagcagacctggtgatcataaacagcagagaggaacagACATTTCTCTTCAACCTCCACCTGAGAGcctggattggtctgactgactctgttactgaGGGGATCTGGAAGTGGGTGGACGGCACCCCACTGACCACAGGGTACTGGGGGAAAGGACAGCCTGATGATTATGGGCAAGAGGACTGTGTTGAGATATACTATGGACAAGATGACCCTGTAAAGACATGGAATGATGAAAATTGTCACAAATATCATGACTGGATATGTGAGAAAGTGGTATAACAATAACCCACAGTaacaaacactctctctctgtgtctctctctctgtgtctctctatctcaattcaattcaagggctttattggcatgggaaacatgctaacattgccaatgcaagtgaggtagataatatacagaagtgaaataaacaataaaaatgaacagtaaacattacactcacagaggttccaaaagaataaagacatgtcaaatggcatattatgtatatatacagtgttgtaacaatgtgcaaat
>XM_036933943.1
GACGCAGAACAGCACAGGGAGACGACACAGCTACAAACGTACATTAGAGTTGAGGTTAGAAGTAGAAGTTACTGTATTTGACCACAAGTGTGTTAAGATGTCAAAGAGAGTCTATGAAATCCCAGATGGATTTAATGACGATGGGCCTGATGATATGAAGAACACAGACATCGATGGCCAATTATATTCCAATGTAGGAGCCTTCAAGCCTAGTCCAAGAGATGGAATTGTTGCTTCAGAGCCTGATAGCTCAGGGAAGAGACCCTTCCTAGTTGCTGCAGTGTttctggggctgctgtgtgttctcctactggctgggatcataggcctgtctgtctactATAACAGAGCCATCAAAGATTCTGAGGATAAAAGGAACAACTTGTCACAGAGTTGTTCCCTTTATAAGACTAACGcaactgcagagagagaccagctacagaccagatacaacaacctgactgaagagagagaccagctacagaccagatacaacaacctgactgaagaGAAAGGCCATATTCAGCTAAAGCTTTTTGTGATAGAGCAGCATTGTCAGGAGGGATGGAGATACTTTGACTCCAGTTTGTACTTCCTGTCTACTGAGACCAAAACCTGGGAGAAGAGCAGACAGgactgtcaggggagaggagcagacctggtgatcataaacagcagagaggaacagACATTTCTCTTCAACCTCCACCTGAGAGcctggattggtctgactgactctgttactgaGGGGATCTGGAAGTGGGTGGACGGCACCCCACTGACCACAGGGTACTGGGGGAAAGGACAGCCTGATGATTATGGGCAAGAGGACTGTGTTGAGATATACTATGGACAAGATGACCCTGTAAAGACATGGAATGATGAAAATTGTCACAAATATCATGACTGGATATGTGAGAAAGTGGTATAACAATAACCCACAGTaacaaacactctctctctgtgtctctctctctgtgtctctctatctcaattcaattcaagggctttattggcatgggaaacatgctaacattgccaatgcaagtgaggtagataatatacagaagtgaaataaacaataaaaatgaacagtaaacattacactcacagaggttccaaaagaataaagacatgtcaaatggcatattatgtatatatacagtgttgtaacaatgtgcaaat

Function

NR:

description
CD209 antigen-like protein E isoform X1

GO: NA

KEGG:

id description
K10059 CLEC4E, MINCLE; C-type lectin domain family 4 member E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933944.1 False 1858 mRNA 0.42 5 73649129 73651780
XM_036933943.1 True 1185 mRNA 0.43 6 73649129 73652039

Neighbor

gene id symbol gene type direction distance location
LOC110534806 LOC106610423 coding downstream 69704 73575963 ~ 73579425 (-)
LOC118966650 NA coding downstream 79675 73566844 ~ 73569454 (-)
LOC118936756 NA coding downstream 92347 73552065 ~ 73556782 (-)
LOC118936759 LOC106597675 coding downstream 125043 73522824 ~ 73524086 (-)
LOC118936757 NA coding downstream 146301 73497645 ~ 73502828 (-)
LOC118966651 LOC106610443 coding upstream 6467 73658506 ~ 73668256 (-)
LOC110534792 LOC106597675 coding upstream 49580 73701619 ~ 73703121 (-)
LOC110497274 LOC106610443 coding upstream 82390 73734429 ~ 73735728 (-)
LOC110497266 LOC106610446 coding upstream 91331 73743370 ~ 73746029 (-)
LOC110497275 LOC106610443 coding upstream 138835 73790874 ~ 73813813 (-)
G923987 NA non-coding downstream 28920 73419086 ~ 73620209 (-)
G923957 NA non-coding downstream 135005 73510748 ~ 73514124 (-)
G924015 NA non-coding downstream 138936 73506103 ~ 73510193 (-)
G923944 NA non-coding downstream 181304 73464388 ~ 73467825 (-)
G924003 NA non-coding downstream 181488 73467313 ~ 73467641 (-)
G924048 NA non-coding upstream 7665 73659704 ~ 73664391 (-)
G924057 NA non-coding upstream 35476 73687515 ~ 73735066 (-)
G924096 NA non-coding upstream 156752 73808791 ~ 73844962 (-)
G924113 NA non-coding upstream 192072 73844111 ~ 73844396 (-)
G924151 NA non-coding upstream 269695 73921734 ~ 73932186 (-)
G924041 NA other downstream 17159 73630142 ~ 73631970 (-)
G923192 LOC106610383 other downstream 723395 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 1885209 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1901245 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 1985995 71658344 ~ 71665901 (-)
LOC110517287 LOC106601385 other upstream 1265138 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 1285866 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 1401077 75053116 ~ 75056174 (-)
G925211 NA other upstream 1631952 75283991 ~ 75284673 (-)
LOC110511405 NA other upstream 1840094 75491540 ~ 75494143 (-)

Expression


Co-expression Network