LOC110534792 (LOC106597675)


Basic Information

Item Value
gene id LOC110534792
gene name LOC106597675
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73701619 ~ 73703121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619742.2
GAGTCATGAACGATTCTGAAGATAAAAGGAACAACTTGTTTCAGAGTTTCTCCCTTTATAAAATCAACGcaactgcagagagagaccagctacagaccagatacaacaacctgactgaagaGAAAGGTCATATTCAGGCAAAGCTTTTTGTGATAGAGCAGCATTGTCAGGAGGGATGGAGATACTTTGACTACAAGTTCTACTTCCTGTCTACTGAGAAGAAAACCTGGGAGGAGAGCAGACAGgactgtctggagagaggagcagacctggtgatcataaacagcagagaggaacagACATTTGTCTTCAACCTCCACCTGAGAGCCTGGATTGGTCTAAGTGACTCTGTTACTGAGGGGACCTGGAAGTGGGTGGACGGCACCCCACTGACCACAGGGTACTGGGGGAAAGGACAGCCTGATGATAGAGGGCAAGAGGACTGTGCTGAGATATACTATGGACAAGATGACCCTGTAAAGACATGGAATGATGACAAATGTGGCACAAATCATAACTGGATCTGTGAGAAAGTGGTGTAACAATAACCCACAGTaacaaacagtctctctctctcgctctgttatTGTTATGTTGATGGTTGAATACAGTACTTTGATGCGGAATTTAATCCCAGTGCAGGAACACCAACGGGCGGAAATTTCAGAACGCCAACTATAGTtttcgataaaactcaaactttcattaaaacacacatgcaaggtactgaattaaagctacactcattgtgaatctagccaccaagtcagatttgtaaaatgcttttcggcgaaagcatgagaagctattatctgatagcatgcacccccccaaaataccagcacgccACATAAAACTACAAGATCatgaacaaacaaacaatctgacaaggacatgaggggaaacagaggctTAAATACACAACCGgataatgaatgggattggaaccaggtgtgtaagaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K06563 CLEC4M, DC-SIGN2, CD209, CD299; C-type lectin domain family 4 member M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619742.2 True 962 mRNA 0.44 4 73701619 73703121

Neighbor

gene id symbol gene type direction distance location
LOC118966651 LOC106610443 coding downstream 33363 73658506 ~ 73668256 (-)
LOC118936371 LOC106610446 coding downstream 49580 73649129 ~ 73652039 (-)
LOC110534806 LOC106610423 coding downstream 122194 73575963 ~ 73579425 (-)
LOC118966650 NA coding downstream 132165 73566844 ~ 73569454 (-)
LOC118936756 NA coding downstream 144837 73552065 ~ 73556782 (-)
LOC110497274 LOC106610443 coding upstream 31308 73734429 ~ 73735728 (-)
LOC110497266 LOC106610446 coding upstream 40249 73743370 ~ 73746029 (-)
LOC110497275 LOC106610443 coding upstream 87753 73790874 ~ 73813813 (-)
LOC110497261 NA coding upstream 207140 73910261 ~ 73912508 (-)
LOC110534578 LOC106602215 coding upstream 253152 73956273 ~ 73965553 (-)
G923977 NA non-coding downstream 33690 73405417 ~ 73667929 (-)
G924048 NA non-coding downstream 37228 73659704 ~ 73664391 (-)
G923987 NA non-coding downstream 81410 73419086 ~ 73620209 (-)
G923957 NA non-coding downstream 187495 73510748 ~ 73514124 (-)
G924015 NA non-coding downstream 191426 73506103 ~ 73510193 (-)
G924096 NA non-coding upstream 105670 73808791 ~ 73844962 (-)
G924113 NA non-coding upstream 140990 73844111 ~ 73844396 (-)
G924151 NA non-coding upstream 218613 73921734 ~ 73932186 (-)
G924178 NA non-coding upstream 277903 73981024 ~ 73982172 (-)
G924187 NA non-coding upstream 312118 74015239 ~ 74018490 (-)
G924041 NA other downstream 69649 73630142 ~ 73631970 (-)
G923192 LOC106610383 other downstream 775885 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 1937699 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 1953735 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 2038485 71658344 ~ 71665901 (-)
LOC110517287 LOC106601385 other upstream 1214056 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 1234784 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 1349995 75053116 ~ 75056174 (-)
G925211 NA other upstream 1580870 75283991 ~ 75284673 (-)
LOC110511405 NA other upstream 1789012 75491540 ~ 75494143 (-)

Expression


Co-expression Network