XLOC_002760 (cadm2a)


Basic Information

Item Value
gene id XLOC_002760
gene name cadm2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23216678 ~ 23379146 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005114
GACAGACTTCTGACTTTACATTGTGATCTATGTAATCTGTCTGTGTGAGTTCTTGGAAAAGTGGTCTGTACTTAGGAGTTTTGCTGAGGTCTAATAAGTTGTATGAAACAACACTTCAGGTGGTTTGTGTGAACTGTGCTTCCTGGGATAGCATCTTTATGTGCTTTTGAATAGTATCACCAGTGTATTGGGAGTCTCTGTAGCTCACAGTGGATGGCACTTGCAAAAGACAAACACTCTTGAATTGTTTTCCATTTCAAGTAGTTATGCTGTTCTGAATCAGACAGATACAAATGCTATTTCCACAACAGGAGGGTTAGTTTGCTCGTTTGACACATTTTACACCCTCTTGAAACTGGCCTGTTCTAATCAAATGTTTTCTCCTCCTGtccttctctttctctccctctgaACCTGTCTTTCCTTCCctattttccttccttccttccctccatCCTCTCCATCCTTACCCCTCCCCATCACGCTCTGCGATTCCAGTGGCGGCAACAAAAAACAAAGTGAGAGGAGCCCAAGGCCAGGTCCCCTTAGTCCAGAACATGACTGTGACAGAAGGAGGGACAGCCAACTTGACCTGCCGTGTGGAACACAATGACAACACCTCCCTCCAGTGGTCGAACCCTGCACAACAGACACTCTTCTTTGGGGACAAGAAagCTCTGAGAGATAACCGGATTGAACTGGTCAGAGCCACGTCGCAGGAGTTGACGATCAGCATCAGCGAGGTCTCGCTGTCAGACGAGGGGCTCTACACCTGCTCCCTCTTCACCATGCCTGTCAAAACAGCCAAGGCTTTCCTCACCGTCCTGGGGGTGCCTAAGAAACCAGAGATCAATGGACTCACCAAGCCGGTCCTGGAGGGAGATCACATCACTCTGACCTGCGTGACCTCTGGCAGCAAACCTGCGGCTGACGTCCGATGGTTCAAAAATGAGATGGAGGTCAAAGGTGCCAAAGAGGTGAATGCCAGTGGCAAGACGTTTACAGTGAAGAGTTCTCTGCGGCTCCACGTGAACCGGGATGATGATGGTGTGGCCTACACTTGTAGAGTGGACCACGTGGCCCTGACTGCAACCCACGAAGAGACCACGCAGGTCTTGGAGGTCCACTATGCTCCCTATGTAGAGATCAGACAATCCACAAACGTCCCACAGGAGGGGCAGTACCTCAAACTGCAATGTGTACCTAAAGGAAACCCCTCGCCAGACCCTGTGCTGTGGACTAAAGATGGAGGAGAGCTGCCAGACATGGACAGGATGATTGTTGATGGAAGAGATCTCACATTCACGTCACTGAACAAAACAGACAACGGCACCTACCGCTGTGAAGCCACCAATCACCTCGGCACCAGTCATGCTGAATTCAAACTGGTTATTTATGATGCCCCCACCACACCGTCACCATCCACCACCTCCCCTGCACCCACCCTCCCAGACACCACAGGTCCCTTAGACTCCAAGCAGCTCAATTCTGCTGTCACCGGTAACAGAGATCCTAATGAGTTGAAACGCGCCACAGATCACGCTTTAATCGGTGGAATCGTTGCTGTCGTCGTGTTCGCTACTTTGTGCTTAATTATTGTATTGGGACGCTACCTGGCACGACATAAAGGCACATACTTGACAAATGAAGCCAAAGGAGCGGATGACGCCCCGGACGCAGACACAGCCATCATCAATGCTGACGGCAACCACGCACACGCAGAAGAGAAGAAAGAGTATTTCATTTAG
>TCONS_00005115
GAGCCCAAGGCCAGGTCCCCTTAGTCCAGAACATGACTGTGACAGAAGGAGGGACAGCCAACTTGACCTGCCGTGTGGAACACAATGACAACACCTCCCTCCAGTGGTCGAACCCTGCACAACAGACACTCTTCTTTGGGGACAAGAAagCTCTGAGAGATAACCGGATTGAACTGGTCAGAGCCACGTCGCAGGAGTTGACGATCAGCATCAGCGAGGTCTCGCTGTCAGACGAGGGGCTCTACACCTGCTCCCTCTTCACCATGCCTGTCAAAACAGCCAAGGCTTTCCTCACCGTCCTGGGGGTGCCTAAGAAACCAGAGATCAATGGACTCACCAAGCCGGTCCTGGAGGGAGATCACATCACTCTGACCTGCGTGACCTCTGGCAGCAAACCTGCGGCTGACGTCCGATGGTTCAAAAATGAGATGGAGGTCAAAGGTGCCAAAGAGGTGAATGCCAGTGGCAAGACGTTTACAGTGAAGAGTTCTCTGCGGCTCCACGTGAACCGGGATGATGATGGTGTGGCCTACACTTGTAGAGTGGACCACGTGGCCCTGACTGCAACCCACGAAGAGACCACGCAGGTCTTGGAGGTCCACTATGCTCCCTATGTAGAGATCAGACAATCCACAAACGTCCCACAGGAGGGGCAGTACCTCAAACTGCAATGTGTACCTAAAGGAAACCCCTCGCCAGACCCTGTGCTGTGGACTAAAGATGGAGGAGAGCTGCCAGACATGGACAGGATGATTGTTGATGGAAGAGATCTCACATTCACGTCACTGAACAAAACAGACAACGGCACCTACCGCTGTGAAGCCACCAATCACCTCGGCACCAGTCATGCTGAATTCAAACTGGTTATTTATGATCCTAATGAGTTGAAACGCGCCACAGATCACGCTTTAATCGGTGGAATCGTTGCTGTCGTCGTGTTCGCTACTTTGTGCTTAATTATTGTATTGGGACGCTACCTGGCACGACATAAAGG

Function

symbol description
cadm2a Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in immature eye; nervous system; and pancreatic system. Human ortholog(s) of this gene implicated in autism spectrum disorder; malignant astrocytoma; obesity; psoriasis; and type 2 diabetes mellitus. Orthologous to human CADM2 (cell adhesion molecule 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1614 Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in immature eye; nervous system; and pancreatic system. Human ortholog(s) of this gene implicated in autism spectrum disorder; malignant astrocytoma; obesity; psoriasis; and type 2 diabetes mellitus. Orthologous to human CADM2 (cell adhesion molecule 2).

Ensembl:

ensembl_id ENSDARG00000009930

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005114 False 1748 mRNA 0.50 10 23216678 23379146
TCONS_00005115 True 994 mRNA 0.53 7 23220501 23358357

Neighbor

gene id symbol gene type direction distance location
XLOC_002759 nle1 coding downstream 116809 23070741 ~ 23099869 (-)
XLOC_002758 FP102052.1 coding downstream 245955 22960380 ~ 22970723 (-)
XLOC_002757 rnasekb coding downstream 298464 22916113 ~ 22918214 (-)
XLOC_002756 si:ch1073-143l10.2 coding downstream 304423 22907351 ~ 22912255 (-)
XLOC_002755 and3 coding downstream 361920 22848556 ~ 22854758 (-)
XLOC_002761 NA coding upstream 133976 23513122 ~ 23519215 (-)
XLOC_002762 NA coding upstream 138915 23518061 ~ 23520243 (-)
XLOC_002763 NA coding upstream 169830 23548976 ~ 23549882 (-)
XLOC_002764 NA coding upstream 401396 23780542 ~ 24049205 (-)
XLOC_002765 inpp5kb coding upstream 923287 24302433 ~ 24319526 (-)
XLOC_002751 AL807389.3 non-coding downstream 464330 22752232 ~ 22752348 (-)
XLOC_002750 NA non-coding downstream 608963 22604273 ~ 22607715 (-)
XLOC_002749 NA non-coding downstream 649470 22554349 ~ 22567208 (-)
XLOC_002748 NA non-coding downstream 681754 22530785 ~ 22534924 (-)
XLOC_002745 NA non-coding downstream 725220 22481158 ~ 22491458 (-)
XLOC_002768 CU467963.2 non-coding upstream 1004120 24383266 ~ 24383381 (-)

Expression


Co-expression Network