LOC110534578 (LOC106602215)


Basic Information

Item Value
gene id LOC110534578
gene name LOC106602215
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73956273 ~ 73965553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619486.2
ACGACTCTAGATACCCAGCTCAACAGGCAGGCAAAGAGACCCTGATTTCTCTGGTTGGAAAGACTGTTCCTTGGAAAAGATTGGCAGCACTCCAAAACCCAAACATGACTGAACAAAATAAAGAGGTCCGGATTGTTCTGGTTGGAAAGATTGGTTCTGGGAAGAGCGCAACAGGAAACGCCATCCTGGGGAGAAAAGCGTTTGAATCCAAAATGTCCTCTATTTCTGTGACATCCTCAAGTAAAAAGAAAAGAGGAAATGTGGGAGGGCAACATGTAGCTGTCATCGACACACCAGGCTTGTTTGACACCAAGTTAACACAGGAGGAGGCACTGAAAGAGATCTCACAGTGCCTGCTATTCTCCGCTCCTGGTCCCCATGTGTTCCTGGTTGTTCTCAAGCTGGGAGGATTCACTGAAGAGCAGCAGGAAATTGTGAAGATGATCCAGACATTATTTGGTGATGAAGCATCGAAATACACCATGGTTGTCTTCACACATGGAGACCTTCTTGATGATGTAACAATTGAAGACTTCCTGCATGGAAATCCCAAACTGGAAAGTTTCATTACCAAATGTAATGGGGGATATCATGTCTTCAAAAACAAAGATCAGAATCCCTCCCAGGTCCCTGAGCTCCTTGAGAAGATAAACAAGATGGTGACGATGAATGGAGgaaaccactacaccactgagatGTTCCAGGAGGCTGAGAGAGTGATTGAAGAAGAGAAGAACAGGATCttgagagagaatgaagagaagATACACAAAGAGAGGGAAGAACTGAAGGCAACGTTTGAAGGAGTGTGTCTAAGAGAAGAAGTAGAGAAGCTGGGGATAAAACAGGAAAGAAAAGCTAGAAAGAATGCTGAGAAATTTAGCAAAATGGGAACAGGTGCTACAATCGGAGCGGCTTTGGGAACATTTGGAGGCCCAGTTGGTATGTCAGTTGGTGCAGCAGTGGGAGCTGCAGTGGGAGCTGGAGCATGCAGTACTCAATGAGAGTCCGTAGATAACAGTGCTGTACCTTCTACAAGTTGTTTGACTTCATTACTTGATATTGAAAGCTTCCTCTATATACACAGAGTCAACACAACATATGTTATTGTAGCCTACATTAAAAATGATACTCAGGGGGTTGATGAACACATATTTAGCTGTTTTTGTTATTATGTTTTACTGATCACAAGAAAAGGTTGTTGTATTGAGGTAGATTTTATTAGGAGTAACAGACACCTGCAAAAGATGGGAGGCACTCACTAATAAAGTATTACTTATATGTATTATTAACACTCACTAATAAAGTATTACTTAGATGTATTGTTAACACTCACTAATGAAGTATTACTTATATGTATTATTAACACTCACTAATGAAGTATTACTTATATGTATTATTAACACTCACTAATGAAGTATTACTTAGATGTATTATTAACACTCACAATGGACACATTTCAGCCATCAAGCATTTCCCTTTTGGACATAATGTCATTAATTACATCATCCATGTGATAATTCTGTATTGTGTTGTTCTTATGACCTCACAGAACCATGGTTCTCATAATTGAAAGAACGCCTCATTATCCACTATGCACCACAGTCAATTTATCCCCTCATGTTGCATGAACTTAAACTTGATGCATTACTGACACTTTGAAGTCAACACATAAGTGTCTAAAGGGCAGGGAGTTCTAATGCAAAGACCCATTTTCTATCAAATCATGTGACTTAGGCTTCTAAATCACACTCAAAGAGATGGCAGCATAACA

Function

NR:

description
GTPase IMAP family member 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619486.2 True 1774 mRNA 0.40 3 73956273 73965553

Neighbor

gene id symbol gene type direction distance location
LOC110497261 NA coding downstream 43765 73910261 ~ 73912508 (-)
LOC110497275 LOC106610443 coding downstream 142460 73790874 ~ 73813813 (-)
LOC110497266 LOC106610446 coding downstream 210244 73743370 ~ 73746029 (-)
LOC110497274 LOC106610443 coding downstream 220545 73734429 ~ 73735728 (-)
LOC110534792 LOC106597675 coding downstream 253152 73701619 ~ 73703121 (-)
LOC110515220 NA coding upstream 23216 73988769 ~ 74009226 (-)
LOC110519805 LOC106610455 coding upstream 80930 74046483 ~ 74054724 (-)
LOC118966652 NA coding upstream 92613 74058166 ~ 74061446 (-)
trnal-cag-6 NA coding upstream 101164 74066717 ~ 74066799 (-)
LOC110534571 LOC106602206 coding upstream 102807 74068360 ~ 74078768 (-)
G924151 NA non-coding downstream 24087 73921734 ~ 73932186 (-)
G924096 NA non-coding downstream 111311 73808791 ~ 73844962 (-)
G924113 NA non-coding downstream 111877 73844111 ~ 73844396 (-)
G924057 NA non-coding downstream 221207 73687515 ~ 73735066 (-)
G924048 NA non-coding downstream 291882 73659704 ~ 73664391 (-)
G924178 NA non-coding upstream 15471 73981024 ~ 73982172 (-)
G924187 NA non-coding upstream 49686 74015239 ~ 74018490 (-)
G924204 NA non-coding upstream 82602 74048155 ~ 74049223 (-)
G924240 NA non-coding upstream 165527 74131080 ~ 74131371 (-)
G924248 NA non-coding upstream 180274 74145827 ~ 74146073 (-)
G924041 NA other downstream 324303 73630142 ~ 73631970 (-)
G923192 LOC106610383 other downstream 1030539 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 2192353 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 2208389 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 2293139 71658344 ~ 71665901 (-)
LOC110517287 LOC106601385 other upstream 951624 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 972352 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 1087563 75053116 ~ 75056174 (-)
G925211 NA other upstream 1318438 75283991 ~ 75284673 (-)
LOC110511405 NA other upstream 1526580 75491540 ~ 75494143 (-)

Expression


Co-expression Network