LOC118936764 (LOC106602208)


Basic Information

Item Value
gene id LOC118936764
gene name LOC106602208
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74093187 ~ 74108411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933972.1
aggtaccaactgtaaagtctgCAGTTACTCCATCATGATGACAACAACCTCAGTCTAACTCTGGATACCTGTTGAGAGCAGTGaggaaaagacagaaagagagaaaaggggaaaagTGTGTAACAAGGAACAACAAGATAGAGGAGGGGAAGACTGACAGAAGACAGGACACTGGACATTATCCACTTGGAAGTCTCAAGGACCACAGAACAGCTGCAGAGCTCCAGACCAGTAGCCCTACCAGCCAGCCCTACCGTCTCCCCAGCAGAGGTCCAGACCAGTAGCCCTACCAGCCAGCCTTACCATCTCCCCTGCAGAGCTCCAGACCACTAGCTCTACCATTTTCCCCAGAATGGCTCTCTCCGGGTCGGGTGGCTTCCTCTCTGAGGATCAGTTCATCTGTTCTATCTGCCTGGATGTGTTCACCAACCCAGTCTCCACACCCTGTGGTCACAGCTACTGTCTGGACTGCATCTCCACCTACTGGGATGgaggagggaagacgTGTGTGTGCCCGCTGTGTAAGGAGAGCTTCAGGAAGAGGCCGGAACTTCACATCAACCGCACCCTGAAGGAGATCACCGAGCAGTTTAAGAAGATGGCAGACGGATTGGACCGGGGGGCCATGGTGTTTGAAGGAGGGATTGAGAGTCAAGGTTTGGGTGGCGGTGGAAATGAGGGGGTGTCATACGGCGTTGAGCGTCCTCCGGTCCCTCCAAGACCCCCAGGGATGGGTGTGATGCCTGGGGATTTGTTGTTGGAGATGAAGACCAGGTTCCAACGACCTTCGAACTCCAGAACCCCTCCGCCGGTCCTCCACCCCCACCCGCCCTCACCCTTCTCCTCCAACACCACCGCCCTCTCGCCCCCCGCCCCTCCTGTTGTCCCACGCAGATACACCCTGAGCGGGCCGGCTGATTCCTCCACCGATGCGCCTCTCTGTCCTGAACACCAGAGGGGGCTGGAGTTCTTCTGCCGGACAGACCAGACGTGTGGGTGTGCCGTGTGCATGGAGGGAGAGCACCATGGACACCAGGTTATACCAGCCAAGAGAGAGTGGCTCATTAAGAAgTCTCAATTGGAAATCACAGAGGCAGAGCTGAGGGACATGATCACACAGAGAGAAAAGAAGGTGGAGGACATCAGGACATCACTGGAGAACATACAAgtgTGTGCGGAGCATGAGACAGCAGGCAGCATGCATATGTTCTCTGCCCTGGTGAGCTCTGTGGAGAGGAGCCAGGCAGAGTTGTTGGAGGTGATAGAGATGTCACAGCGGGCTGCACAGCACCAAGGACAGACCCTCATCAGAGACCTAGAGCAGGAGATCTCTGAGCTGAGGAAGAGAAGCGCTACCCTCACCCAGCTAGCCCAGTCTGACGACTACGTACTTTTCTTCAAGACATTCTCCACGCCGCCTCAGACCAGGGATTGGTCGGATGCTgttgtgacctctgacctcaccTCAGGGGCGGTGCTTCTGACTGTCAATCAAATGGTGGAGCGGTTTCGGGAGGAGCTCAAGAGACTGCCGGAGATCTGTCTGCGTCCTCAACCTCAAACAGACCAATCTGTGGGGAGAAATATTCCAAGGTTGCGTCCTCAACCTCAACCAGACCAATCTGTGGGAAGATGCAGTCCAAGTTTGCTTTCTCAACCAAACTATGCTGTCGGAAGAAATAGTCCAAATTTACCTTCTCAACCAGACCAGTCCCTGGGAAGAAGTAGTCCAAGTTTGCGTTCTCCACCTCCACCAGAACACTCTGTAGGAAGTCCAGATTGGCTTTCACACCCTCAACCAGAGCAGTCAGTGGGAAGAAATCCAAAACCAAAGGTGAGGAGAGTGCAGGAATATGCAGtggACATAACCCTGGACCCCCTCACCGCCCACCCACGCCTGCTCATCTCCGACGACGGCAAGCAGGTGCGCTGCTGGGACCGCTACCAGCCCGTGGCGGACGGCCCCGAGCGCTTTGACCGTGTGGTCTGCGTCCTCGGGCGCCAGGCCTTCTCTTCGGGACGCCATTACTGGGAGGTGGAGGTGGGTGGGAAGACGGACTGGGACCTGGGCGTGGCTAGCCACTCCATCAACAGGAAAGGGAAGATCACAGTAAGCCCCGCCCACGGCTACTGGTTCCTGAGTCTCCGGGATAAGAACGACTACGCGTTCCGAACGGAACCGTCGACAGCGCTGGGCCTCAACCACAAACCCAACCGTATAGGGATCTACGTAGACTGTGATAAGGGACAGGTGTCGTTCTATAATGTGGACGCTAAGATGCTCATCTATACATTCACCGACAGCTTCTCGGATGTCATTCATCCCTTCTTCAGCCCTTGCACCAATAAGTCTGGCAGGAACGAGGCGCCGCTCATCATTTGTCCTGTCTCGATGCCTCTGGTGGACTGAGAtgggttttagttttttttttgttcattccTAAAGGTAGTTTCCTTCAGTCTGTCCTTGTTCAATGTTCTTCACTGAGCCAATAGGACGGGACTGGATAGGGCAAAGCAATATGGGGGAAGCTATAGCTGATGCGCCCAATATACCCAGATGTCTCATGTCAACATAGGGAAGGGAACAAGGCCAGAAGAGAGGGAACAATTTTCTGCAATGAAATACAGTCTCTTAGAACCATTCATAATGACCTCCTGTGTTCTATGGAGCTGACCAATGGATAATCTGGATACTGAGTCTGGATTGGACTGATCATTTTGACCAATACAACCGACTACAGTCCATCAGTCTGAGAATGAAGGATTTCACCATCTGTCCTTATCACAGGATGGATTAATCTGTCTATATAGGGTCATATGTGTCTCACATGGCTCCCTATTCACATATAGTCTGCttctttgaccagagccccatgggccCTATGTATTGCATTACTATATGGAATAGTGTGTTATTTGTGACATAACCACAGTCATTACAAATAAAACATATTACTTGTACATTACAATCCAGTTTTTGAAGAATGTCCACAATAAACCAAATGTAAACTATGTGGACTGGGAGCCACTGAGTAAGACCCagagacaaacacaaagacaaaGAATCCTTTATGAGCCAGTCAATTTAGTCATCGTATTCTACACAGAGTGGAGAAAACTTTaagaatacctgctctttccatgacatagactgaccaggtgaatcca
>XM_036933971.1
aggtaccaactgtaaagtctgCAGTTACTCCATCATGATGACAACAACCTCAGTCTAACTCTGGATACCTGTTGAGAGCAGTGaggaaaagacagaaagagagaaaaggggaaaagTGTGTAACAAGGAACAACAAGATAGAGGAGGGGAAGACTGACAGAAGACAGGACACTGGACATTATCCACTTGGAAGTCTCAAGGACCACAGAACAGCTGCAGAGCTCCAGACCAGTAGCCCTACCAGCCAGCCCTACCGTCTCCCCAGCAGAGGTCCAGACCAGTAGCCCTACCAGCCAGCCTTACCATCTCCCCTGCAGAGCTCCAGACCACTAGCTCTACCATTTTCCCCAGAATGGCTCTCTCCGGGTCGGGTGGCTTCCTCTCTGAGGATCAGTTCATCTGTTCTATCTGCCTGGATGTGTTCACCAACCCAGTCTCCACACCCTGTGGTCACAGCTACTGTCTGGACTGCATCTCCACCTACTGGGATGgaggaggagggaagacgTGTGTGTGCCCGCTGTGTAAGGAGAGCTTCAGGAAGAGGCCGGAACTTCACATCAACCGCACCCTGAAGGAGATCACCGAGCAGTTTAAGAAGATGGCAGACGGATTGGACCGGGGGGCCATGGTGTTTGAAGGAGGGATTGAGAGTCAAGGTTTGGGTGGCGGTGGAAATGAGGGGGTGTCATACGGCGTTGAGCGTCCTCCGGTCCCTCCAAGACCCCCAGGGATGGGTGTGATGCCTGGGGATTTGTTGTTGGAGATGAAGACCAGGTTCCAACGACCTTCGAACTCCAGAACCCCTCCGCCGGTCCTCCACCCCCACCCGCCCTCACCCTTCTCCTCCAACACCACCGCCCTCTCGCCCCCCGCCCCTCCTGTTGTCCCACGCAGATACACCCTGAGCGGGCCGGCTGATTCCTCCACCGATGCGCCTCTCTGTCCTGAACACCAGAGGGGGCTGGAGTTCTTCTGCCGGACAGACCAGACGTGTGGGTGTGCCGTGTGCATGGAGGGAGAGCACCATGGACACCAGGTTATACCAGCCAAGAGAGAGTGGCTCATTAAGAAgTCTCAATTGGAAATCACAGAGGCAGAGCTGAGGGACATGATCACACAGAGAGAAAAGAAGGTGGAGGACATCAGGACATCACTGGAGAACATACAAgtgTGTGCGGAGCATGAGACAGCAGGCAGCATGCATATGTTCTCTGCCCTGGTGAGCTCTGTGGAGAGGAGCCAGGCAGAGTTGTTGGAGGTGATAGAGATGTCACAGCGGGCTGCACAGCACCAAGGACAGACCCTCATCAGAGACCTAGAGCAGGAGATCTCTGAGCTGAGGAAGAGAAGCGCTACCCTCACCCAGCTAGCCCAGTCTGACGACTACGTACTTTTCTTCAAGACATTCTCCACGCCGCCTCAGACCAGGGATTGGTCGGATGCTgttgtgacctctgacctcaccTCAGGGGCGGTGCTTCTGACTGTCAATCAAATGGTGGAGCGGTTTCGGGAGGAGCTCAAGAGACTGCCGGAGATCTGTCTGCGTCCTCAACCTCAAACAGACCAATCTGTGGGGAGAAATATTCCAAGGTTGCGTCCTCAACCTCAACCAGACCAATCTGTGGGAAGATGCAGTCCAAGTTTGCTTTCTCAACCAAACTATGCTGTCGGAAGAAATAGTCCAAATTTACCTTCTCAACCAGACCAGTCCCTGGGAAGAAGTAGTCCAAGTTTGCGTTCTCCACCTCCACCAGAACACTCTGTAGGAAGTCCAGATTGGCTTTCACACCCTCAACCAGAGCAGTCAGTGGGAAGAAATCCAAAACCAAAGGTGAGGAGAGTGCAGGAATATGCAGtggACATAACCCTGGACCCCCTCACCGCCCACCCACGCCTGCTCATCTCCGACGACGGCAAGCAGGTGCGCTGCTGGGACCGCTACCAGCCCGTGGCGGACGGCCCCGAGCGCTTTGACCGTGTGGTCTGCGTCCTCGGGCGCCAGGCCTTCTCTTCGGGACGCCATTACTGGGAGGTGGAGGTGGGTGGGAAGACGGACTGGGACCTGGGCGTGGCTAGCCACTCCATCAACAGGAAAGGGAAGATCACAGTAAGCCCCGCCCACGGCTACTGGTTCCTGAGTCTCCGGGATAAGAACGACTACGCGTTCCGAACGGAACCGTCGACAGCGCTGGGCCTCAACCACAAACCCAACCGTATAGGGATCTACGTAGACTGTGATAAGGGACAGGTGTCGTTCTATAATGTGGACGCTAAGATGCTCATCTATACATTCACCGACAGCTTCTCGGATGTCATTCATCCCTTCTTCAGCCCTTGCACCAATAAGTCTGGCAGGAACGAGGCGCCGCTCATCATTTGTCCTGTCTCGATGCCTCTGGTGGACTGAGAtgggttttagttttttttttgttcattccTAAAGGTAGTTTCCTTCAGTCTGTCCTTGTTCAATGTTCTTCACTGAGCCAATAGGACGGGACTGGATAGGGCAAAGCAATATGGGGGAAGCTATAGCTGATGCGCCCAATATACCCAGATGTCTCATGTCAACATAGGGAAGGGAACAAGGCCAGAAGAGAGGGAACAATTTTCTGCAATGAAATACAGTCTCTTAGAACCATTCATAATGACCTCCTGTGTTCTATGGAGCTGACCAATGGATAATCTGGATACTGAGTCTGGATTGGACTGATCATTTTGACCAATACAACCGACTACAGTCCATCAGTCTGAGAATGAAGGATTTCACCATCTGTCCTTATCACAGGATGGATTAATCTGTCTATATAGGGTCATATGTGTCTCACATGGCTCCCTATTCACATATAGTCTGCttctttgaccagagccccatgggccCTATGTATTGCATTACTATATGGAATAGTGTGTTATTTGTGACATAACCACAGTCATTACAAATAAAACATATTACTTGTACATTACAATCCAGTTTTTGAAGAATGTCCACAATAAACCAAATGTAAACTATGTGGACTGGGAGCCACTGAGTAAGACCCagagacaaacacaaagacaaaGAATCCTTTATGAGCCAGTCAATTTAGTCATCGTATTCTACACAGAGTGGAGAAAACTTTaagaatacctgctctttccatgacatagactgaccaggtgaatc

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1

GO: NA

KEGG:

id description
K06712 BTN, CD277; butyrophilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933972.1 False 3171 mRNA 0.52 16 74093187 74108411
XM_036933971.1 True 3172 mRNA 0.52 16 74093189 74108411

Neighbor

gene id symbol gene type direction distance location
LOC118936763 LOC106602222 coding downstream 539 74079315 ~ 74092648 (-)
LOC110534571 LOC106602206 coding downstream 14419 74068360 ~ 74078768 (-)
trnal-cag-6 NA coding downstream 26388 74066717 ~ 74066799 (-)
LOC118966652 NA coding downstream 31741 74058166 ~ 74061446 (-)
LOC110519805 LOC106610455 coding downstream 38463 74046483 ~ 74054724 (-)
LOC118966653 NA coding upstream 4337 74112748 ~ 74113617 (-)
LOC118936765 LOC106592562 coding upstream 566369 74674780 ~ 74676826 (-)
LOC118936766 NA coding upstream 587652 74696063 ~ 74707724 (-)
LOC110497259 NA coding upstream 650278 74758689 ~ 74760648 (-)
LOC110518241 LOC106592562 coding upstream 657577 74765988 ~ 74768163 (-)
G924204 NA non-coding downstream 43964 74048155 ~ 74049223 (-)
G924187 NA non-coding downstream 74697 74015239 ~ 74018490 (-)
G924178 NA non-coding downstream 111015 73981024 ~ 73982172 (-)
G924151 NA non-coding downstream 161001 73921734 ~ 73932186 (-)
G924113 NA non-coding downstream 248791 73844111 ~ 73844396 (-)
G924240 NA non-coding upstream 22669 74131080 ~ 74131371 (-)
G924248 NA non-coding upstream 37416 74145827 ~ 74146073 (-)
G924442 NA non-coding upstream 96261 74204672 ~ 74209934 (-)
G924486 NA non-coding upstream 197531 74305942 ~ 74391812 (-)
G924490 NA non-coding upstream 290236 74398647 ~ 74404518 (-)
G924041 NA other downstream 461217 73630142 ~ 73631970 (-)
G923192 LOC106610383 other downstream 1167453 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 2329267 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 2345303 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 2430053 71658344 ~ 71665901 (-)
LOC110517287 LOC106601385 other upstream 808766 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 829494 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 944705 75053116 ~ 75056174 (-)
G925211 NA other upstream 1175580 75283991 ~ 75284673 (-)
LOC110511405 NA other upstream 1383722 75491540 ~ 75494143 (-)

Expression


Co-expression Network