LOC118936765 (LOC106592562)


Basic Information

Item Value
gene id LOC118936765
gene name LOC106592562
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74674780 ~ 74676826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933983.1
CTTCTTCAACAACATCTAGTCAGCCACCTCGGTAGCTTCCTAGCGGAAACGTTCAAGCTGTTCAGACTGCTTCGGTCCATATTTACTTCTGTATTTGGAACATAATTCTGTCTTTTAACTAGTTTCCCCATTTCATGTCATATTTCCGTTTAGTCAGGTAACGGTAGCTGGCTTGATAAATGAGCCTAtcactaggctagtcgctaactagctaggttagctggctaacatccccgaccatgagcTCAGCAAGCTACTGCCCTCCTGCTAAAAAAGAGGTCTGCTGGAAGGAGGAAAAAGGTATTTGGCTGAACGTTGTCGTGAAAGAGGAGAATGAAGAGGAGGATGTCACAGTAAACGAAGAAGTCGAGGGTGAGGCTGTTACacagaaagaagaggaagaaaacGATTATACTTTTTTTGGAGTGAATGAAGGAGAGATAACTGTCATattgaaggaggaggagagggaagaagagaaggagacagaagatcTGAGTAACACCAgagagagaccagactctcCTTCTGACAGCGGGAAGAGTCCTTCAGGGAAACCAGACCCCGAGACGTCCAAACCAGCAGGACGAcatcactgctcccagtgtggaaagagttttactcagttagGGAGCCTGAGAACACATAagagaatacacactggagagaagccatacCACTGTTCCCAATGTGGAATGACGTTTACCCAGTTAGGGAGCCTGCAAACGCATGAGAGGGGACACACAGGGGAAAAGCTTTTCCAATGttcccattgtggaaagagttttggcCAGGTAGGAAACCTGAACaagcatgagaggacacacacaggtaagAAGATGTAccgctgctcccagtgtggagagAGATTTACCCGGTTAAGGTACCTGAAAGAGCATGAAAgaatacatacaaatacacaggaggagaagacataccactgctctcattgtggaaagacattttcccagtcagagaaCCTGAAAACACATGAGAGAATCGAGAGGCTGTGTTCTGACTTGTGTTTTTGactgagaatgtgtgtgtttgtttgggcTGTCAGACTTGAGTTCACTTCGTATAATgttagtgcactatttttaatTGTGATTAATCCATTGTCTCAAAGGGTTAAAAACACACTGAAAACATCCAagatacatactatatacagctAAAATCTACAATGCCATGTAAACACAAGATGACATTGAGGTTAAATAAAGTGTGATTTATCAATGGAA

Function

NR:

description
gastrula zinc finger protein XlCGF49.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933983.1 True 1244 mRNA 0.44 2 74674780 74676826

Neighbor

gene id symbol gene type direction distance location
LOC118966653 NA coding downstream 561163 74112748 ~ 74113617 (-)
LOC118936764 LOC106602208 coding downstream 566369 74093187 ~ 74108411 (-)
LOC118936763 LOC106602222 coding downstream 582132 74079315 ~ 74092648 (-)
LOC110534571 LOC106602206 coding downstream 596012 74068360 ~ 74078768 (-)
trnal-cag-6 NA coding downstream 607981 74066717 ~ 74066799 (-)
LOC118936766 NA coding upstream 19237 74696063 ~ 74707724 (-)
LOC110497259 NA coding upstream 81863 74758689 ~ 74760648 (-)
LOC110518241 LOC106592562 coding upstream 89162 74765988 ~ 74768163 (-)
LOC110511351 LOC106597013 coding upstream 148360 74825186 ~ 74877445 (-)
LOC118936768 NA coding upstream 217908 74894734 ~ 74910153 (-)
G924995 NA non-coding downstream 21177 74652525 ~ 74653603 (-)
G924997 NA non-coding downstream 23423 74646413 ~ 74651357 (-)
G924587 NA non-coding downstream 110765 74563612 ~ 74564015 (-)
G924487 NA non-coding downstream 189538 74399317 ~ 74485242 (-)
G924490 NA non-coding downstream 270262 74398647 ~ 74404518 (-)
G925015 NA non-coding upstream 2422 74679248 ~ 74770657 (-)
G925024 NA non-coding upstream 12725 74689551 ~ 74732397 (-)
G925027 NA non-coding upstream 29256 74706082 ~ 74796698 (-)
G925026 NA non-coding upstream 29512 74706338 ~ 74796853 (-)
G925034 NA non-coding upstream 41423 74718249 ~ 74719101 (-)
G924041 NA other downstream 1042810 73630142 ~ 73631970 (-)
G923192 LOC106610383 other downstream 1749046 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 2910860 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 2926896 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 3011646 71658344 ~ 71665901 (-)
LOC110517287 LOC106601385 other upstream 240351 74890707 ~ 74932952 (-)
LOC118966654 LOC106597013 other upstream 261079 74933999 ~ 74970163 (-)
LOC118936366 LOC106566139 other upstream 376290 75053116 ~ 75056174 (-)
G925211 NA other upstream 607165 75283991 ~ 75284673 (-)
LOC110511405 NA other upstream 815307 75491540 ~ 75494143 (-)

Expression


Co-expression Network