LOC110517287 (LOC106601385)


Basic Information

Item Value
gene id LOC110517287
gene name LOC106601385
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74890707 ~ 74932952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110517287
ATGATACCTGCAGTGAtactgatgaccctgttgtggaGCGCAGAGTCTGTGCAGCTTGTAGATGGAGCTGAtctctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgactttgaccggcaggatgcagaggtagtctgtagggatgttggctgtggggctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaaggcaaagagtcccttctcctggactgtgacacctcagacagagagaacaacacctgcctacctggtaatgctgttggactcacctgctcagagcctgatgatgtgaggctggtgggaggaggcagtcgctgtGCTGGTCGAGTGGAGTGGTACGACCAGCGAGAGTGGAGGACTGTGGGAGCTGTCAAGAATCAGGAGGATGTAgctgcagtagtgtgtagacagctggGTTGTGGCTCCACTGTTTCAGTACTACCTGGAAACACCAGTAGAGGGATTGGAGTTAAATGTTCTGGGTCTGAGTTTTCACTGAGGGAGTGTAGAAGAACGTATGAACTCCGtcctggactcacagtgatctgctcagatgactcccaccaagggaactacagctgtgtttatgacaattatgttttctctcataacttctcctctgagagtgagctcctctccctcgtcatcacagCCTCTCCTCTGCCAGCCGTCATCATCAGACATGTTGTAGTGCTGCTGATCCTTCTGACAGCCATCACCACCtcctacctgtactacaagCCCACCAGGAGGCAGATGAGAGTGAACAGGGTGAGCAGCATGGATCTTTATGTCAATGCCTTGGAGACGgtctctctgagctccagagctgaagctggaccgggagaggagagagcagcccaggGGACGGAGTAGGAGTAGAATGAAGCTGACCCTACAtgctgatcttaggtcagttttgtgttttaaatCGATGGTCAGCAGTGGACTGGTGTTTAAAATGTGGTGACAAACCTGAAGTGGTTCTAATTTTAATAACAAGTTCAGAATTAGTTTCTCTTTCTAGAACCTTGGAAGAAATCTAAAAGGAGTGACTGCAACCACCATTATTCATTTAGTTTGGTTTTTACCACCAGagaaacatggggttctgggtaacatggggtttgggtaacatggggttctgggtaacatggggttttaggtaacatggggttctgggtaacatgggg
>TU1052292
tggggctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaaggcaaagagtcccttctcctggactgtgacacctcagacagagagaacaacacctgcctacctggtaatgctgttggactcacctgctcagagccagatgatgtgaggctggtgggaggaggcagtcgctgtGCTGGTGGAGTGGAGGGGTACGACCAGGGAGCTTGGAGGACTGTGGGAACTCAAGACTGGGAGCAGGAGGATGTAgctgcagtagtgtgtagacagctggGTTGTGGCTCCACAGTTTCAGTACTACCTGGAATCACCACTAGAGGGTTTAGAGTTTACTGTTATGGTCCTGAGTCTTCACTGAGGGAGTGTGGAAGATCAGATGATCTCcttcctggactcacagtgatctgctcagcctctcctctgccagccttcatcatcagacacgttgtagtgctgctgatcctactgacagccatcaccacctcttacctgtactacaagcccaccaggagacagaagagagtgaacagggtgagcagcatggatctttatgtcaatgccatggagatggtctctctgagctccagagctgaagctggaccgggagaggagagagcagcccaggGGACGGAGTAGGAGTAGAAT
>TU1052402
tcacagtgatctgctcagATCTCCTGGTCCAGCCTGATATCTCCCTGACTGACTCAATGGGAGGGGTCTTCAGGGGCCACCAGGGGCCCGAGATGTTCAGGGGCTACAACTTCACCATCACCTGCTCCACTCAGCCACAGTACCCAGGGGGCTCCTTCCTCCTCACGTTCACCGGCTCCAACAGAACCCATACCCAGccagctgtcaatcactctgctgccttcctcttccctgctgcagatgactcccaccaagggaactacagctgtgtttat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110517287 False 1265 mRNA 0.57 6 74916356 74932952
TU1052292 False 682 lncRNA 0.54 4 74890707 74918812
TU1052402 True 275 TUCP 0.57 2 74917177 74918259

Neighbor

gene id symbol gene type direction distance location
LOC118936768 NA coding downstream 6203 74894734 ~ 74910153 (-)
LOC110511351 LOC106597013 coding downstream 38911 74825186 ~ 74877445 (-)
LOC110518241 LOC106592562 coding downstream 148193 74765988 ~ 74768163 (-)
LOC110497259 NA coding downstream 155708 74758689 ~ 74760648 (-)
LOC118936766 NA coding downstream 208632 74696063 ~ 74707724 (-)
LOC118966654 LOC106597013 coding upstream 1047 74933999 ~ 74970163 (-)
LOC110516473 LOC106591540 coding upstream 102778 75035730 ~ 75085676 (-)
LOC118936366 LOC106566139 coding upstream 120852 75053116 ~ 75056174 (-)
LOC118936693 LOC106592283 coding upstream 203172 75136124 ~ 75201466 (-)
LOC118936770 LOC105006021 coding upstream 470691 75403643 ~ 75412894 (-)
G925083 NA non-coding downstream 7609 74860391 ~ 74908747 (-)
G925053 NA non-coding downstream 74471 74781693 ~ 74841885 (-)
G925071 NA non-coding downstream 83696 74831629 ~ 74832660 (-)
G925069 NA non-coding downstream 93056 74822993 ~ 74823300 (-)
G925010 NA non-coding downstream 107502 74807646 ~ 74808854 (-)
G925104 NA non-coding upstream 6816 74939768 ~ 74961812 (-)
G925077 NA non-coding upstream 32199 74965151 ~ 74966051 (-)
G925110 NA non-coding upstream 46633 74979585 ~ 74986624 (-)
G925117 NA non-coding upstream 71040 75003992 ~ 75034849 (-)
G925014 NA non-coding upstream 127337 75060289 ~ 75060910 (-)
G924041 NA other downstream 1284386 73630142 ~ 73631970 (-)
G923192 LOC106610383 other downstream 1990622 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 3152436 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 3168472 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 3253222 71658344 ~ 71665901 (-)
G925211 NA other upstream 351039 75283991 ~ 75284673 (-)
LOC110511405 NA other upstream 559181 75491540 ~ 75494143 (-)
G926001 NA other upstream 1463396 76396348 ~ 76399221 (-)
LOC118936765 LOC106592562 coding downstream 213881 74674780 ~ 74676826 (-)
G925026 NA non-coding downstream 93854 74706338 ~ 74796853 (-)

Expression


Co-expression Network