LOC118966654 (LOC106597013)


Basic Information

Item Value
gene id LOC118966654
gene name LOC106597013
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74933999 ~ 74970163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989388.1
CTAGTTGGTGGAGCATGATGATAGAGGTCAGGTTTGTGTGTAGAGAGCTGGACTGTGGGAATCCTGTAGCTGAATCTGGAATACCTCTGCTTGAAGATGGAAGACGAAGAGTTATACTAGGTGGTTGCTATGGAAATGAGTCTTCTGTTAGACAGTGTGACATTGTAAGAGGAGGACCTGGTGGCTGTAATGGTAGAACTTATCATCATGTGACCTGTTCAGAGTCTGTGCGGCTTGTGGATggagctggtctctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgaCTTTGACCGGCAGGATGCAGAGGTAGTCTGTGGGGAGTTTGGCTGTGGggctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaagGCAATGAGTCCCTTCTCCTGGACTGTGACACCTCAGACAGAAAGAACACCTGCCTACCTGGTAATGCTGTTGGACTAACATGCTCAGATCTCCTGGTCCAGCCTGAAATCTTCCTGACTGACTCAATGGGAGGGGTCTCCAGGGGCCACCAGGGGGCCGAGATGTTCAGGGGCTACAACTTCACCATCACCTGCTCCACTCAGCCACAGTACCCAGGAGGCTCCTTCCTCCTCACGTTCACCGGCTCCAACAGAACCCAGATCCAGCAAGCTcaTTAA
>TU1052404
GATCTCCTGGTCCAGCCTGAAATCTTCCTGACTGACTCAATGGGAGGGGTCTCCAGGGGCCACCAGGGGGCCGAGATGTTCAGGGGCTACAACTTCACCATCACCTGCTCCACTCAGCCACAGTACCCAGGAGGCTCCTTCCTCCTCACGTTCACCGGCTCCAACAGAACCCAGATCCAGCAAGCTGTCAATCACTctgctgccttcctcttccctgctgcagatgactcccaccaagggaactacagctgtgtttatgacaattatgttttctctcataacttctcctctgagagtgagctcctctccctcgccatcacagcctctcctctgccagccttcatcatcag

Function

NR:

description
deleted in malignant brain tumors 1 protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989388.1 False 716 mRNA 0.53 4 74933999 74970163
TU1052404 True 350 TUCP 0.55 2 74937905 74938357

Neighbor

gene id symbol gene type direction distance location
LOC110517287 LOC106601385 coding downstream 1047 74890707 ~ 74932952 (-)
LOC118936768 NA coding downstream 23846 74894734 ~ 74910153 (-)
LOC110511351 LOC106597013 coding downstream 56554 74825186 ~ 74877445 (-)
LOC110518241 LOC106592562 coding downstream 165836 74765988 ~ 74768163 (-)
LOC110497259 NA coding downstream 173351 74758689 ~ 74760648 (-)
LOC110516473 LOC106591540 coding upstream 65567 75035730 ~ 75085676 (-)
LOC118936366 LOC106566139 coding upstream 83641 75053116 ~ 75056174 (-)
LOC118936693 LOC106592283 coding upstream 165961 75136124 ~ 75201466 (-)
LOC118936770 LOC105006021 coding upstream 433480 75403643 ~ 75412894 (-)
LOC110511405 NA coding upstream 521377 75491540 ~ 75494143 (-)
G925083 NA non-coding downstream 25252 74860391 ~ 74908747 (-)
G925053 NA non-coding downstream 92114 74781693 ~ 74841885 (-)
G925110 NA non-coding upstream 9422 74979585 ~ 74986624 (-)
G925117 NA non-coding upstream 33829 75003992 ~ 75034849 (-)
G925014 NA non-coding upstream 90126 75060289 ~ 75060910 (-)
G925132 NA non-coding upstream 94607 75064770 ~ 75228247 (-)
G925148 NA non-coding upstream 134433 75104596 ~ 75105125 (-)
G924041 NA other downstream 1302029 73630142 ~ 73631970 (-)
G923192 LOC106610383 other downstream 2008265 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 3170079 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 3186115 71744768 ~ 71752698 (-)
G925211 NA other upstream 313828 75283991 ~ 75284673 (-)
G926001 NA other upstream 1426185 76396348 ~ 76399221 (-)
G926732 NA other upstream 2811849 77782012 ~ 77783305 (-)
G925104 NA non-coding upstream 1411 74939768 ~ 74961812 (-)
G925077 NA non-coding upstream 26794 74965151 ~ 74966051 (-)

Expression


Co-expression Network