LOC110512116 (LOC106591540)


Basic Information

Item Value
gene id LOC110512116
gene name LOC106591540
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 75314380 ~ 75389957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933978.1
GATTTCCACACAGTGGAGTCTCTGCAGATGGTGAAAAACAGGATGTGTCACACACTGTGGTCACACCCAAACAGCTCTTTGCTGTCCGCCCAGACTTAACACTAAGTCACACAAGACAAGTTTGTATCAGTGGAATAAAACTAGCATTTAACAACAGACAATTCTCTAAGTAATAAAACAGTATAGCATGTCTCATTTACCACCACACCTGTTGAGTTGACTTGGGTAACAGACCTCTAGCTTCTACAACACAGAAAGTTAGAGGGGACTTTCTCAAGTCAGTCACTGACAATTAGGTAAGATATTATAGGACACCATGTGTAActgctgctctgtcagcagtttcctgGGGAGTTTTTCTGATGTCAGTGTTTCCTTTAGGAAGGTGGGTTTAACTGATCTGATTTGCTTAACAGTTTGCCACATAATTGAAGTAAGGAAGTAATGAGTTAGAAATCATATAGCCTAGCAGTATTTCTCACTCTTCAGTCCTCTCTTCATGACAGTAGACTTGTTTCGCTCAGtggagccccagttagagaaAGATATGATACCTGCAGGGATATTGATGATCCTGTTCTGGAGCACAGatctccaggctcaaagcgtcagtccaccagCTGAAATCTCAGTCAGACTGGTGGATGGGACCACTTCCTGTTCTGGGACAGTGGAAGTCTTCTACAGAGGAGAGTGGTTGAGTCTATGTTCTAGTTGGTGGAGAATGATGAGAGAGATTAAGGTTGTGTGTAGAGAGCTGGACTGTGGGAATCCTGTAGCTGAATCTAGAGGACCTCTGTTTGAAGATGGAAGAAGAGGAGTCACACTATATAGTAGTTGCTATGGAGATGAGTCTTCTATtagacagtgtgacatcacaggaGGACCTGGTTTCTGTGATGGTGAATATTATCGTCATGTGACCTGTTCAGagtctgtgcggcttgtggatggagctggtctctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgaCTTTGACCGGCAGGATGCAGAGGTAGTCTGTAGGGATGTTGGCTGTGGGTctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaaggcaatgagtcccttctcctggactgtgacacctcagacagaaaacacaacaCCTGCCCACCTGGTAATGctgttggactcacctgctcagagcctgatgatgtgaggctggtgggaggaggcagtcgctgtGCTGGTGGAGTGGAGCGGTACTaccagggagagtggaggatTGTGGGAACTGAAGACTGGGACCAGGAGGATGTAgctgcagtagtgtgtagacagctggGTTGTGGCTCCACTGTTTCAGTTCTTCCTGGAAACACCACTAGAGGGTTTGGAGTTTCCTGTTCTGGGTCTGAGTCTTCACTGAGGGAGTGTAGAAGATCAGATGATCTCCTTCCTGGAttcacagtgatctgctcagATCTCCTGGTCCAGCCTGATATCTTCCTGACTGACTCAATGGGAGGGGTCTTCAGGGGCCACCAGGGGCCCGAGATGTTCAGGGGCTACAACTTCACCATAACCTGCTCCACTCAGCCACAGTACCCAGGAGGCTCCTTCCTCCTCACGTTCACCGGCTCCAACAGAACCCAGACCCAGccagctgtcaatcactctgCTGCATTCCACTTCCCTGCTGCAGATGACTCCCACCAAGGGAACTACAGCTGTGTTTATGACAATTATGTTTTCTCTCATAACTTCTCCTCTGAGAGtgagctcctctccctcaccatcacagCCTCTCCTCTGCCAGCCTTCATCATCAGACAcgttgtagtgctgctgaccctactgacagccatcaccacctcctcctacctgtactacaagCCCACCAGGAGGCAGAAGAGAGTGAACAGGGTGAGCAGCATGGATCTTGACGTCAATGCCATGGAGATGgtctctctgagctccagagctgaagctggaccgggagaggagagagcagcccaggGGACGGAGTAGGAGTAGAATGAATCTGACCCTACAtgctgatcttaggtcagttttgtgttttaaatCGATGGTCAGCAGTGGACTGGTGTTTAAAATGTGGTGACAAACCTGAAGTGGTTCTAATTTTAATAACAAGTTCAGAATTAGTTTCTCTTTCTAGAACCTTGGAAGAAATCTAAAAGGAGTGACTGCAACCACCATTATTCATTTAGTTTGGTTTTTACCACCAGAGAAACATGGGGttctggtaacatggggttctgggtaacatggggttttgggtaac
>XM_036933979.1
TAGCGCCCAGTAGACTCCATTCACTCCGTGATGGAGAGCGATCCCTGTCCCAGAGTCGCCCAGAATGCACCGCGTGGGCCAATGACGTAGTATCGTCAACGTTTCCTCAAAAGTATATCTGCCGTTGTGATTTAAACTTCACTCTGTGAGACACatcgatctgcaggttgaacatgatctccaggctcaaagcgtcagtccaccagCTGAAATCTCAGTCAGACTGGTGGATGGGACCACTTCCTGTTCTGGGACAGTGGAAGTCTTCTACAGAGGAGAGTGGTTGAGTCTATGTTCTAGTTGGTGGAGAATGATGAGAGAGATTAAGGTTGTGTGTAGAGAGCTGGACTGTGGGAATCCTGTAGCTGAATCTAGAGGACCTCTGTTTGAAGATGGAAGAAGAGGAGTCACACTATATAGTAGTTGCTATGGAGATGAGTCTTCTATtagacagtgtgacatcacaggaGGACCTGGTTTCTGTGATGGTGAATATTATCGTCATGTGACCTGTTCAGagtctgtgcggcttgtggatggagctggtctctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgaCTTTGACCGGCAGGATGCAGAGGTAGTCTGTAGGGATGTTGGCTGTGGGTctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaaggcaatgagtcccttctcctggactgtgacacctcagacagaaaacacaacaCCTGCCCACCTGGTAATGctgttggactcacctgctcagagcctgatgatgtgaggctggtgggaggaggcagtcgctgtGCTGGTGGAGTGGAGCGGTACTaccagggagagtggaggatTGTGGGAACTGAAGACTGGGACCAGGAGGATGTAgctgcagtagtgtgtagacagctggGTTGTGGCTCCACTGTTTCAGTTCTTCCTGGAAACACCACTAGAGGGTTTGGAGTTTCCTGTTCTGGGTCTGAGTCTTCACTGAGGGAGTGTAGAAGATCAGATGATCTCCTTCCTGGAttcacagtgatctgctcagATCTCCTGGTCCAGCCTGATATCTTCCTGACTGACTCAATGGGAGGGGTCTTCAGGGGCCACCAGGGGCCCGAGATGTTCAGGGGCTACAACTTCACCATAACCTGCTCCACTCAGCCACAGTACCCAGGAGGCTCCTTCCTCCTCACGTTCACCGGCTCCAACAGAACCCAGACCCAGccagctgtcaatcactctgCTGCATTCCACTTCCCTGCTGCAGATGACTCCCACCAAGGGAACTACAGCTGTGTTTATGACAATTATGTTTTCTCTCATAACTTCTCCTCTGAGAGtgagctcctctccctcaccatcacagCCTCTCCTCTGCCAGCCTTCATCATCAGACAcgttgtagtgctgctgaccctactgacagccatcaccacctcctcctacctgtactacaagCCCACCAGGAGGCAGAAGAGAGTGAACAGGGTGAGCAGCATGGATCTTGACGTCAATGCCATGGAGATGgtctctctgagctccagagctgaagctggaccgggagaggagagagcagcccaggGGACGGAGTAGGAGTAGAATGAATCTGACCCTACAtgctgatcttaggtcagttttgtgttttaaatCGATGGTCAGCAGTGGACTGGTGTTTAAAATGTGGTGACAAACCTGAAGTGGTTCTAATTTTAATAACAAGTTCAGAATTAGTTTCTCTTTCTAGAACCTTGGAAGAAATCTAAAAGGAGTGACTGCAACCACCATTATTCATTTAGTTTGGTTTTTACCACCAGAGAAACATGGGGttctggtaacatggggttctgggtaacatggggttttgggtaac

Function

NR:

description
CD5 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933978.1 False 2342 mRNA 0.48 8 75314380 75389957
XM_036933979.1 True 1928 mRNA 0.51 8 75322678 75389957

Neighbor

gene id symbol gene type direction distance location
LOC110516474 LOC106595897 coding upstream 7716 75302967 ~ 75306664 (+)
LOC118936769 NA coding upstream 12085 75290971 ~ 75302295 (+)
LOC118966655 LOC106609853 coding upstream 47005 75263122 ~ 75267375 (+)
LOC110516094 NA coding upstream 74366 75233437 ~ 75240014 (+)
LOC110498618 NA coding upstream 541838 74771732 ~ 74772542 (+)
LOC110511403 LOC106610548 coding downstream 33477 75423434 ~ 75481518 (+)
LOC110511404 LOC106590758 coding downstream 100340 75490297 ~ 75513196 (+)
LOC110516378 LOC106588734 coding downstream 128908 75518865 ~ 75521685 (+)
LOC110534598 LOC106602138 coding downstream 482834 75872791 ~ 75886436 (+)
LOC110531901 LOC106610543 coding downstream 1479746 76869703 ~ 76884980 (+)
G924832 NA non-coding upstream 29725 75284025 ~ 75284655 (+)
G924638 NA non-coding upstream 36811 75275686 ~ 75277569 (+)
G924794 NA non-coding upstream 66813 75204988 ~ 75247567 (+)
G924859 NA non-coding downstream 1221 75391178 ~ 75391607 (+)
G924865 NA non-coding downstream 13601 75403558 ~ 75406561 (+)
G924879 NA non-coding downstream 35732 75425689 ~ 75426309 (+)
G924890 NA non-coding downstream 77414 75467371 ~ 75467724 (+)
G924893 NA non-coding downstream 80392 75470349 ~ 75470817 (+)
G924816 LOC106601384 other upstream 71379 75242472 ~ 75243001 (+)
G924787 NA other upstream 125149 75187255 ~ 75189231 (+)
G924772 NA other upstream 209410 75104617 ~ 75104970 (+)
G923659 NA other upstream 1633495 73483851 ~ 73680885 (+)
G923434 NA other upstream 2098922 73214487 ~ 73215458 (+)
G924916 NA other downstream 133401 75523358 ~ 75525800 (+)
G924927 NA other downstream 167503 75557460 ~ 75562892 (+)
G926448 LOC105024706 other downstream 1903876 77293833 ~ 77296009 (+)

Expression


Co-expression Network