pcdh7a (LOC103353181)


Basic Information

Item Value
gene id pcdh7a
gene name LOC103353181
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 75561915 ~ 75645371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933995.1
CAACACTGCCTCTCGTTCCGTTCTCCCGTTTCAGCTGAACGATCAAGTTACGTGGCTAGGGAAATGTtgcagtgaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggcggagagagagagactgcagcatCATTTCAGATCAGGCAGAAAGCAAGCCACGCGCGCACATGCAGTGCAGTAGAACGTGcaggtgagagaaagaaagagagagagaaggcgtgCGTGGAGAATGAACGATAGAATGCAGGACTCTTGTAAAACACGCATTTTCTCTCGGTTCATGACCGAAACATCCTCGCGAACGCACAAGGAATTATAATTGACCGGTTTGTTGACTTCGGGATCTCttttgcctttaaaaaaaaaaaaaacaagggttGCTGATGTGAGCGAGCTCCGGTTTACGGTTTAGATTATTATTCCGTCCCGAGAAGTGGCTGTGAAAAGCACTATTGTCTTGTGAAGTTCCGCGAAGGCATTCGACCAACTGCTTGGCACGTTGCTTCACTGCGGGGAAAAAAAAACACACGCGTAGTTCAGACTCATAGCGGAGAGCGAGAGGTAAGAAACCACAATTAAACTCTAAACGATTACCGGACGATATCAAATACTTTACTTTTGAACCGATTGTGTTCCGCTTTGTGGATGTAAGTATTTTTTCACAACATTAGTGATTCGGGGTCCCGAGACAGAGTCGTGTACAGTTTTCTTTGTGGATGTGCTGCATTGCAGTTTCTCTTCAACTCGTCAAAAAGCCCCCTCGGTCCCCCGGAACGCGACCGGAATTAAGCGAAATTACTAACGGACTAATATAACTGATACGAGAGTCCtcaagagagggagaaacggaATACGGTCTCCAtcataaaaagagagagagcgagagagagtcaaGTGGATTAATTAACGTGAGTGGATGATTTGGATTTCTCTCTTCTTGCTGGATGGATTTGCTGATATCTTTGTGCTCTGAACATCCCAGAGAGACTTAGAGGAAGTTTATTTTTAAACCCTCAACAATAAAGAGAAAGACAAAAGAATAGAGGAAACAGACATCCTGACTGAAACAGAGATATAGAAACCGATAGTCACATTAAGGACAGAGAGACTGATCTGCAGTGTGTTATTAGAGTGCTGTAAAGCTTTCCTGAACCCCAGGCAGTGGAActgccaagagagagagagagaggggggaagagtgagagaaagagagggaacaaAGATATACAGCCCAGATAGACACATTAACgacagagaaggagggaaaggTAGAAATATAGATCCCcagagacaggaaagagagactgaggaatagagagagagagagaggggaaagagacagGGGTAGATGGTAGAGACAGCCATGCGAAGGACAGGGGTAGGTGTCTGTGGTGGAGCAGTGTTCTCCTGCTCGGTAACTCTAACTGGACCGGGGGAGTTGTTCCACCTCCTAGTCCTTCTCCTACTAACGATGACTCAGCTCCCGGTCGCTGACTCGGCTCTCCGTTACCGGGTGGCTGAGGAGGGCCCCGCAGACGTTATGATTGGTAATGTGGCTGCCGACCTCGGCCTGTCCGCAGGCACCGGCTCCGGAGATGTCACATTCGCCCTAGAGAGCGGCTCGGAGTTCTTCAAGATTGATAACGTTACCGGGGAGCTGACTACCGGGCAGCGGAGGATTGACCGGGAGAAGCTGTCCCAGTGTCAGATGATCTTCGATGAGAACGAGTGTTTCCTGGACTTCGAAGTGTCTGTGATTGGTCCGCTCCAGAGTTGGGTGGATCTCTTTGAGGGCCGTGTGGTCATCACCGACATCAACGACAACACTCCCTCGTTTCCGTCGTCGGTGCTGACATTATCTGTCGAGGAGAACCGTCCAATAGGCACGCTGTATCTGTTACCCACGGCGACGGATCGCGACTTCGGGCGCAATGGGATTGATCGTTATGAGCTGATTCAAGATGGCAGCTCTTCCGGGTCGgcggggtcagggttggggtcagcgAGGAGAGCAGCCGGAGGGCCAATGGGAAGAGCGgatggaacaggaggaggaggggataggaggagaggagcattGGATAACAACGGAGGAGGTgcaggaggaggtgtgaggagcAGTGTGTTTGAGCTCCAGGTCGCCGACACGCCCGACGGCGAGAAGCAACCGCAGCTGATCGTGAAAGGCCCTCTGGACCGTGAAGCACGCGACTCGTATGAGCTGGTTCTACGGGTCCGGGACGGTGGCAACCCTCCTCGCTCTTCCCAGGCACTCCTCCGTGTCGCCATCACCGATGTCAACGACAACAGCCCGCGCTTCGAGAGAGCCATCTATGAGGCCGAGATGGCGGAGAATGCGCCTCCCGGAACCCCCGTCCTCCAGGTGCGCGCGTCGGACCGCGACGTCGGCGTCAACGGACAGGTGGAGTACGTCTTCGGCGCTGCCACGGAATCTGTCCGCCGTCTTCTCCGACTGGACGAGGCTACCGGTTGGCTGAGCGTCCTCCACAGGATTGACCGGGAGGAAGTGGCCCAGTTACGGTTCACGGTCACGGCAAGGGATCGTGGTCAGCCGCCGCGCACCGACCGGGCGACCGTAGTCCTGGTGGTCCGGGATGAGAACGACAACGTTCCGGTCGTGGAGATCAGGAAGATCGGACGGATTCTGGTGAGGGACGGAGTGGCGCTGGTACCGGAGAATGTTCTGGTGGACACGCCGGTGGCGCTGGTTCAGGTGTCAGACCGGGACCAGGGGGAGAACGGAGCGGTAACCTGTACGGTGGTCGGGGATGTACCGTTCACCCTGAAACCAGCGGGAGAGACGGCACTCCTGCCACTGCCCGCGGATGACGCCTTCGACAGAAACCGTAAGAAGTATTTTCTCCACACGTCGGCCCTGTTGGATTACGAGGCCACCAAAGAGTACAGCGTGACCATCGTGGCAGTCGACTCCGgttccccgtctctctccagCAACAGCTCTCTCATGGTCAGGGTAGTGGACATCAACGACCACACTCCTGCCTTCGCCCAGGCCGTGGTGGAGGTCCACTTTGCCGAGAACAACCAACCAGGAGAGCGTGTGGTCACCGTGGTTGCGGCGGATTCCGATTCCGGAAAGAATGCAGAGATCGTGTATTCGTTGGATCCGTCCGTTACCGGCCTGTTCTATATTGATGCTGATAATGGGGATATCCGCGCGACAGGGGTTCTGGACCGGGAGGTTAGGGAGAGGTACGAGTTCCAGGTGATCGCCAGGGATAAGGGATTCCCCTCGCTGCAAGGGTCGGCCACGGTGGTAATCATGGTGACCGACCGCAACGACAACACTCCGAAGTTCGTCCAGGAAGTGTTCACGTTCTACGTGAAGGAGAACCTCCTTGCCAACAGCCCAGTCGGCATGGTAACGGTAACAGACGCGGATGAGGGTGAGAACGCGGAGCTGAGTCTTTTCgtagagatggaggaagaagaaggagaagaggtggagggaggaggagcaggggagaagaacaagggagtaggagaggagggaggaggaagaggaggaagaggtgaagaCACGTTCTCCATAGAGAACAACACAGGGACGATCTTCTCCTCCGTGGCCTTTGACCGGGAACGCCGTTCCACCTACACCTTCCGCGTCCGGGCCATCGACGGCGGGGCTCCGCCTCGCTCCGCCACGGCGACAGTCTCCCTCATCGTAACTGATGAGAACGACAACGCCCCCTCCGTGACCTCGCCCACCAACGATTCCTACACCCTCCTCCCCCCGGCCTCCTCCACCCGGACCATCGTCAGAACCGTGGCCGCCTCGGACTCGGACTTTGGCCGCAACGCTGACCTGCGCTTCTCCCTGGTAGGAGGGAACCCCTTCAGGCTGTTTGAGATCGGCCTGGCCAGTGGAGTGATCACCGTGGCAGAGCCCCTCGAGAGGAGACACAGGGGGCTGCATCGCCTGGTGGTCAGGGTCAACGACAGTGGAGAGCCATCGCTCTGCGCCACCGCGCTGGTCCACGTCTTCATCAACGAGAGTCTGGTCAACGCTACACTGGTGGACGCACAGgTGGCTCGTAGTCTGGCCGCCCCTCTCTACCTGGACATCGCGGGCGACCCCGACAGCGAGCGAGCGTTGGGGAAACAGCGCCTCTCGGTGGCCATCGGTGTCCTGGCGGGCGCCGCGGCAGTCATCCTGGTCATCCTCCTAGTGGTGATGGCCCGCCAGTGTGGCGCCCAGGGCAAGAACGGATACGAGGCCGGGAAGAAAGAACCGGAAGAGGATTTCTTTAGCCCTCAACCGGCCGTGCCACAAACCAGGGGAGGGACGTTGGACCGCGGACGGAAGCCCCGCAGGGACAAACGGAACGGAGGCGCTGGAGGAGCCGGAGCCGGTAATAAAACTGAACGGCCGCTCTACAGCGGCGTCGTCACGGTCAACGGGCTCCGTCGCCACGGCAACGACCACCACCACGTCGCCAACGTCGACGATGACGACGAGGACGTGAGCAGCGCCAGCGAGAGGTTGGCGGCGAGGTACTGCGCGGTGGACGGAGACCCCGGGAGCCCACGCATGGGCGCCAGGCATCACCAGTCGAGCCCAGATCTGGCCAGGCATTATAAGTCAAGCTCGCCGCTCCCCGCGGTGCACCTCCAGCCCTACAGCCCCCCAGCCGAGGGGAAAAAGCACCAGGCTGTACAGGAGCTGCCCCCCTCTAACACCTTCGTGGGGTCTGGAGGGTCCAGTGGTAGTGGTGGAAGTGGGAACGCTGATGCCATGTCTCTGGGGTCAGACCAGTGTTCTGAGTATGGATCCCAAACGGGGAATAAGTACAGCAAGCAGGCGACCCTGCGGAGGGTGACGTTCTCCGTGGTCCCTGGGCCTCAGGACGGTTGCTATGACAGCGCTGCAGAGGACTCTGAGACCCCCAGCAGTAAGGGTTCATCTGGACCCCGAGTGGGGGCGCTGTCTCTCCCCGAGGAGGGGTACGAGAGGACCACACCTGAGGGAAGTGTAGGAGAGGAGGAACATGTGGAGAACGATGCCAGACAGCTCCCAGACGTAGCCCTGACAGGGAAGTGCACTAGGGAGTGTGATGAGTTTGGACACTCCGACACTTGTTGGATGCCCGCCGCTATCCGCCCGTCGCCTCGGCAACACCAGCGCCAGCGCCACGTCAGCGAGCCGCCCCGCCTGTCCACCTTCGCCTCCCCTGGCAACGACAACAACAATAACCATGACGACGATGATGAGGAAGATAGTGACAGCGAGAGCGCCGGCAGCGCCGGGAGTTCCGAACCGGGCGTAGTCAGCGTGGGAGTCGGCGGAGGAGGTCAGAGGTTACCGTTAGCCAATGGGGATCCTCTCGGCAGCCTGGTGGGCAGAGACAGGATGAACCGGAACATGGGCGACCACAACCGGAACCTACTCAACCGGAAGATGACGTCAGCGTCGTACGACACGTTCAGCTCCGCCGGGTTCGGGAGACGCCATCACGAGGAGGATAGGGGGGGTCAGGGCAGGGTCAACCCTCCGGAAGTTATACCATTAACTAGGACCGGGGACTACAAGACCACGTCGTGCCTCACGCTCTCCCGTAGAGAGGTCTACCTGTAAGAGCAGGATGGATGGATCAGTCCACTGCTGCTGCACCCCTTTGCTGATGGAATGGAACATTCCATCCCTGTTTGTTCTGATGAAATGGAACAGCCCACTTCTAGACATTGGAATGAAATGGTCCATTTCTGTTGTAGTTCTTTTGTTGAGAACTTTGACCAGCTgtgaataataacaataatatcaaTAATAACAACACCTTAAGAAGAGAGGACCGCTCAGTGGGTTTGGGTTGGTTTTGGAGACAAGACACCACACAACTACAAAGCCACAAAAAAAAGAACACTGGGACCTTAGACTCCAAGAAGAAATGACTATAAGGTGTAAATAAAAAAGATGAATGGTGTGAATTAACTGAAcacccccccatcccccatcccccaaaGAAAACTACGATTTAATCGAATCTGAACTTTTGGATGGTAAAAACATCATATTTATGTGGATGGTGAGGAGGGAGATGGATCCATGGATCTcctttgggagagagagagagcagttctGACTGACTTCATCTAATCTGTGTAGAAGTTTCTCTCAAaaaacagatctaggatcagtttactctTCCCTGAATCCTAACCTGAAGTATTACAGGAAGCAACACATTACTGAACTGAGATCAGTGTCAAGTGTTaacttctttcttctctcttttttttaataCTCTTTAAAGTTAATTAGATGCATGTCTAACCTCCCACCAACAGGGGAGCtgtggggagatgggagagagatggaggaactgGGCCTGACGCCATACACGCCTCAGGACCAATGGGAACACTCGCtgaggtgtatgtgaccaatgcaatttgatttgaacacttATGATCGGACAGATCTGAATCTGACTAATGTGGCGAACCCGATGATGGGACGCCATGAAGGGTTAACCAATCAAACGATAGGACCAACGAGCTGTCGTTGTAAAAAGGAATTTGAATGGATTTCATGCTCATCAATCAAATGTGATTTAAACCTAATCCACCAATCATCTATGGCATTATTGACAAGTAGCATCGAGATATTAACCAACCGTACAACGAGGATTATCAGAATCTAACCAATCACGGACAATATATTTTCAGTAACAACCAATCGGATTCTTTGGCAAAGACGAGGATTTAGGAAAAGATAACTGATTGAAAAAAAACATCAGGTATTTTTGAAAACACAAAGACTTGGGAGGCAAAAACAATGTGAGGTTTTTTCCCGGAAATGAGCCAGAATCCCTGGGAATACGAGGTCCATACGAGTATCAGTGCCAACGTATTCCAGCTTTTTCTAATGAAAAAATGACACTTTTTCTGTCTTTCTGCTCTACTCTTGCTGAGACTAGGGAAGCTAAATTCTGGGAATGTTCCCAAAATTCCAAGGTTtttcagaaatcctggttgaaggaTTACGGATTTCCTACCTATTCCGAGGAATCTTTTATAATCGGGATTCCTGAAAAAAAACCTGGGGATTTTGGGAAAGTTAgtggttagttagttacctagaCTGTACAGATGTAGTGTGGTTTATGTGGTTTAGACTGGCAGTGTTCCAACACTGTCATCCATTCATTAAGGCCATTTCTCTACCGTGCTGAGCACCAGTTACTTCATTCATTATGTATATCAGGAtcttccctctctcacacacacaatgtagtgaaacacacacacacacacactcacacacactcagtgaTACCATACCCACACAACATAGACGTgcgagatgcacacacacacacacacacacacacacacacacacacacacacacactcaatgaaACCATACCCACACAACATAGACGTgcgacatgcacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacataatgtatCTACATGCATTTAACCATACTTTATAACATATAACATGTTGCCTCTGAAAACTAGCTTTTTGCCTGctcccccccctcttcccccccatcttcacccccccccctcccctcctcttcacccccccccccctcccctcctcttcacccccCTTCATGTCAACTTGTATTTAAATAAGTCTTTCAACACATTAAAGGGATGTTTTGGTCTATATAGCGGCTCTACATTAAAGGGATGTTTTGGTCTATATAGCGGCTCTACATTAAAGGGATGTTTTGGTCTATATAGCGGCTCTACATTAAAGGGATGTTT
>TU1052652
CAAGTATCCCAaatagcacactattccctatgtagtacactaggGTCTGAAGGCTTGTggtccaatgtagtgcaacacacacacacactcacacacactcagtgaTACCATACCCACACAACATAGACGTgcgagatgcacacacacacacacacacacacacacacacacacacacacacacactcaatgaaACCATACCCACACAACATAGACGTgcgacatgcacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacataatgtatCTACATGCATTTAACCATACTTTATAACATATAACATGTTGCCTCTGAAAACTAGCTTTTTGCCTGctccccccc

Function

NR:

description
PREDICTED: protocadherin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933995.1 False 7868 mRNA 0.53 6 75561915 75645371
TU1052652 True 376 lncRNA 0.45 2 75562150 75609953

Neighbor

gene id symbol gene type direction distance location
LOC110511405 NA coding downstream 67772 75491540 ~ 75494143 (-)
LOC118936770 LOC105006021 coding downstream 149021 75403643 ~ 75412894 (-)
LOC118936693 LOC106592283 coding downstream 360449 75136124 ~ 75201466 (-)
LOC110516473 LOC106591540 coding downstream 476239 75035730 ~ 75085676 (-)
LOC118936366 LOC106566139 coding downstream 505741 75053116 ~ 75056174 (-)
LOC110513050 LOC106610486 coding upstream 734896 76380267 ~ 76417797 (-)
LOC110497198 LOC106602151 coding upstream 1216678 76862049 ~ 76870007 (-)
LOC110497205 LOC106610372 coding upstream 1413051 77058422 ~ 77138155 (-)
LOC118936771 LOC106592107 coding upstream 1504549 77149546 ~ 77175471 (-)
LOC110515566 LOC100700017 coding upstream 1563138 77208509 ~ 77247484 (-)
G925283 NA non-coding downstream 279 75560063 ~ 75561636 (-)
G925284 NA non-coding downstream 2317 75558633 ~ 75559598 (-)
G925289 NA non-coding downstream 4499 75557174 ~ 75557416 (-)
G925320 NA non-coding downstream 33450 75528173 ~ 75528465 (-)
G925318 NA non-coding downstream 38669 75522910 ~ 75523246 (-)
G925360 NA non-coding upstream 19003 75664374 ~ 75666645 (-)
G925393 NA non-coding upstream 87085 75732456 ~ 75733499 (-)
G925399 NA non-coding upstream 114631 75760002 ~ 75774823 (-)
G925401 NA non-coding upstream 116396 75761767 ~ 75798978 (-)
G925402 NA non-coding upstream 119938 75765309 ~ 75766850 (-)
G925211 NA other downstream 277242 75283991 ~ 75284673 (-)
LOC118966654 LOC106597013 other downstream 623558 74933999 ~ 74970163 (-)
LOC110517287 LOC106601385 other downstream 643656 74890707 ~ 74932952 (-)
G926001 NA other upstream 750977 76396348 ~ 76399221 (-)
G926732 NA other upstream 2136641 77782012 ~ 77783305 (-)
G927157 timm10 other upstream 2317166 77961348 ~ 77963652 (-)
G927317 LOC106610497 other upstream 2736898 78382269 ~ 78434096 (-)
G927222 LOC106610501 other upstream 2795934 78441305 ~ 78441982 (-)

Expression


Co-expression Network