LOC110497198 (LOC106602151)


Basic Information

Item Value
gene id LOC110497198
gene name LOC106602151
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 76862049 ~ 76870007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934007.1
CTCTTTGGCACGAGCTACTGTATGTATTTTGATAACAAGCTAAATATATAGGCATCACACCAGCGCGAAACTGGATTAATCTTCTTACAAAGTAAGTAACGTTAGCCTTCCTATCAGTCATGATGCACCGATCGTGGACATCGGTGTCGCTAAAAGCGGTTATCTTCCTCTATGTACTTACATGCGCAGAACTTAAAATGACTGAGATGGAGTTTGTGATCAGCACCACATGGGACAGCCTTCCTGTGGATCATGACCCTGTGAAGGTGACGTTTTCTCccggggatggagggatgaagatgCAGGTGTCTGCTCCCTTCTTCAACAACCCTCCTGGTCCCTCCGGCCCTCCAGGACAGCCCTTCCCTGGCCTCTGGAACTATGAAGTGGTTGAGGCGTTCTTCCTGGACAGTACTACTGTGAACTATCTAGAGGTGGAAGTGTGTCCACATGGACAACACTTGGTGTTACTGCTCTCTGGAAGAGGTCACGCATTCATGCAACAACTGCCCCTGTCGTTCACGGCAACCATCACAGGAAACAGGTGGGAGGGTGAGGCTCTTCTCCCCTGGTGCTACTTCCCCCCTAACGTGAACAAGATGAACTCGTACGCCATCCACGGGTCCGGTGCGGGGCGTACCTACGAGTCCCTCTACCCTGTCCCCCAGGCTGACCTCGTGGAGGGGCAGAAGCCCAACTTCCACCTCTTGGAATATTTCCAAGACTTTCGCCTGCAAAGCATCATGGGAGGGGACTGGGTCCAGCCCGAGTCGGATCTCTGGAAGGGAAAGTGATGAGtcgggagaacacacacactggaacacacgCGCGTGATGACAGCGGGTGCGACCAAAGTCACGGAGGAGGAACGATCGATCTTGATTAGTTAATGATGTCAGACTGGATGAAATATGTTACCAGTTTGTCAGATGGTATTAACACCTCACCTCAAACTGCCTTTTACCGACTGCCTGAGGCCTGGTTCAAAACACACATGAAGGGGTTTCTAGATTCTATTTTTCTATGAATGAAAGTGAGAATCAAAGTGTATTATATCTGTGCTTTCTGTTTTATAGATTTATGCctttctctctgaaatgaaaGACCATTGAATTTGATCATTTTCAATGCTACCTCCAATTCATTGTGGGAGTATCATTGTTATTCAATTAGATGAAGGCTCATCATGACGAGTTTACACTTTTGATTCATGGTTTCGTGCAATGCATTGATCATCACACACCAATATGTCTGTAATTCATCATTGTGACCAATTCTACTGTGCTGAAGCTGGAGTAAGGCTGTTTTGCTTCAATTACTCCCGAGCAAATGAAAATGGATTGtctggcatcccaaatggcatcctattccctgttttagtgcactacttttcagaAGTAGTaagctacatagggaatagggtgccatttggcatgccAGACATTGAGATAATTAGTAGTCATTAGATAACGGCCATATGTGCCCTTTTTTTGTAATGATGTTAAATGAGCTCTTGGGTCGTCATTACTTCTGGGATCCATATAGGACTGTTGTCTTATGGAATGTTAATGTACGTAGATGAGCTGCAGCCtatcaaataaatacattaaataaacGA
>XM_036934008.1
ATACAAACAGTTCCACCTATTTCCTGGAACACAGTTTAAACCTGGCATCAATCAATTAGATATGAAACGCCATTTCAATATGTAAACAAATGTACTTCGAGACTGTTGTACTGGGTTGCGTGCCAACTGATTCCGTAATTATTCCACCCAAGAACATCTGATATGGAAGATATATCATAATATGATCATACCAGGAAGTTGATACTCCATTGAAAGTGCATTATCTCTTTGGCACGAGCTACTGTATGTATTTTGATAACAAGCTAAATATATAGGCATCACACCAGCGCGAAACTGGATTAATCTTCTTACAAAACTGAGATGGAGTTTGTGATCAGCACCACATGGGACAGCCTTCCTGTGGATCATGACCCTGTGAAGGTGACGTTTTCTCccggggatggagggatgaagatgCAGGTGTCTGCTCCCTTCTTCAACAACCCTCCTGGTCCCTCCGGCCCTCCAGGACAGCCCTTCCCTGGCCTCTGGAACTATGAAGTGGTTGAGGCGTTCTTCCTGGACAGTACTACTGTGAACTATCTAGAGGTGGAAGTGTGTCCACATGGACAACACTTGGTGTTACTGCTCTCTGGAAGAGGTCACGCATTCATGCAACAACTGCCCCTGTCGTTCACGGCAACCATCACAGGAAACAGGTGGGAGGGTGAGGCTCTTCTCCCCTGGTGCTACTTCCCCCCTAACGTGAACAAGATGAACTCGTACGCCATCCACGGGTCCGGTGCGGGGCGTACCTACGAGTCCCTCTACCCTGTCCCCCAGGCTGACCTCGTGGAGGGGCAGAAGCCCAACTTCCACCTCTTGGAATATTTCCAAGACTTTCGCCTGCAAAGCATCATGGGAGGGGACTGGGTCCAGCCCGAGTCGGATCTCTGGAAGGGAAAGTGATGAGtcgggagaacacacacactggaacacacgCGCGTGATGACAGCGGGTGCGACCAAAGTCACGGAGGAGGAACGATCGATCTTGATTAGTTAATGATGTCAGACTGGATGAAATATGTTACCAGTTTGTCAGATGGTATTAACACCTCACCTCAAACTGCCTTTTACCGACTGCCTGAGGCCTGGTTCAAAACACACATGAAGGGGTTTCTAGATTCTATTTTTCTATGAATGAAAGTGAGAATCAAAGTGTATTATATCTGTGCTTTCTGTTTTATAGATTTATGCctttctctctgaaatgaaaGACCATTGAATTTGATCATTTTCAATGCTACCTCCAATTCATTGTGGGAGTATCATTGTTATTCAATTAGATGAAGGCTCATCATGACGAGTTTACACTTTTGATTCATGGTTTCGTGCAATGCATTGATCATCACACACCAATATGTCTGTAATTCATCATTGTGACCAATTCTACTGTGCTGAAGCTGGAGTAAGGCTGTTTTGCTTCAATTACTCCCGAGCAAATGAAAATGGATTGtctggcatcccaaatggcatcctattccctgttttagtgcactacttttcagaAGTAGTaagctacatagggaatagggtgccatttggcatgccAGACATTGAGATAATTAGTAGTCATTAGATAACGGCCATATGTGCCCTTTTTTTGTAATGATGTTAAATGAGCTCTTGGGTCGTCATTACTTCTGGGATCCATATAGGACTGTTGTCTTATGGAATGTTAATGTACGTAGATGAGCTGCAGCCtatcaaataaatacattaaataaacGA

Function

NR:

description
UPF0462 protein C4orf33 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934007.1 False 1618 mRNA 0.46 6 76862049 76869783
XM_036934008.1 True 1733 mRNA 0.45 6 76862049 76870007

Neighbor

gene id symbol gene type direction distance location
LOC110513050 LOC106610486 coding downstream 444252 76380267 ~ 76417797 (-)
pcdh7a LOC103353181 coding downstream 1216678 75561915 ~ 75645371 (-)
LOC110511405 NA coding downstream 1367906 75491540 ~ 75494143 (-)
LOC118936770 LOC105006021 coding downstream 1449155 75403643 ~ 75412894 (-)
LOC118936693 LOC106592283 coding downstream 1660583 75136124 ~ 75201466 (-)
LOC110497205 LOC106610372 coding upstream 188415 77058422 ~ 77138155 (-)
LOC118936771 LOC106592107 coding upstream 279913 77149546 ~ 77175471 (-)
LOC110515566 LOC100700017 coding upstream 338502 77208509 ~ 77247484 (-)
LOC118936772 LOC105024706 coding upstream 423434 77293441 ~ 77317804 (-)
LOC110518902 LOC106610539 coding upstream 770522 77637791 ~ 77719167 (-)
G926170 NA non-coding downstream 40195 76820759 ~ 76821854 (-)
G926152 NA non-coding downstream 99431 76762100 ~ 76762618 (-)
G926117 NA non-coding downstream 114092 76675806 ~ 76747957 (-)
G926122 NA non-coding downstream 173661 76687768 ~ 76688388 (-)
G926118 NA non-coding downstream 182121 76677009 ~ 76679928 (-)
G926217 NA non-coding upstream 62780 76932787 ~ 76933531 (-)
G926219 NA non-coding upstream 67292 76937299 ~ 76938610 (-)
G926231 NA non-coding upstream 93997 76964004 ~ 76964506 (-)
G926232 NA non-coding upstream 99260 76969267 ~ 76970137 (-)
G926238 NA non-coding upstream 107318 76977325 ~ 77028052 (-)
G926001 NA other downstream 464101 76396348 ~ 76399221 (-)
G925211 NA other downstream 1577376 75283991 ~ 75284673 (-)
LOC118936366 LOC106566139 other downstream 1807668 75053116 ~ 75056174 (-)
LOC118966654 LOC106597013 other downstream 1923692 74933999 ~ 74970163 (-)
G926732 NA other upstream 912005 77782012 ~ 77783305 (-)
G927157 timm10 other upstream 1092530 77961348 ~ 77963652 (-)
G927317 LOC106610497 other upstream 1512262 78382269 ~ 78434096 (-)
G927222 LOC106610501 other upstream 1571298 78441305 ~ 78441982 (-)
LOC110497241 LOC106610501 other upstream 1572921 78440760 ~ 78445626 (-)

Expression


Co-expression Network