LOC110510687 (LOC106591138)


Basic Information

Item Value
gene id LOC110510687
gene name LOC106591138
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 77722229 ~ 77734491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989393.1
ATGTATTTTCTCTTAGTACTTCCTGCTCCAGACCAGCTGACTGTTGACTCAGTGGACACCACATCAGCTGCTGTTAGCTGGAACCAGCCACCAGGATTGGACCAAACCCAACATCAGTACCAGATCTCCTACCACTGTCCAGGGACAGAACCACACATCACCACCACGTCTTCACCCAGCATCACTCTCTCTGACCTGAAACCTGCTACTGAATACTCTGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGCAAAGTGAACTGGTGTCAACAACCTTCACCACAATACTTCCTGCTCCAGACCAGCTGACTGTTGACTCAGTGGACACCACATCAGCTGCTGTTAGCTGGAACCAGCCACCAGGATTGAACCAAACCCAACATCATTACCAGATCTCCTACACCTGTCCAGGGACAGAACCACACATCACTACCACATCTTCACACAGCATCACTCTCTCTGACCTGCAACCTGCTACTCAGTACTCTGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGCAAAGTCAACTGGTGTCCACAACCTTCACCACAGAACATGTTCAGTGGTGGAAGAGACCCTCCACAGTTGCTGCAGTGTTTGTTCTACTGGCTGTGATCATTGGCCTGTGGGATTCCTATGCAACttcagagagagaccagctacagaatagTCTAAATACCAGGACCACAGaaagagaccagctacagaccagttacaacaccccgactaaagagagagaccagctacagaatcGTCTAAATACAAGGACCACAGaaagagaccagctacagaccagttacaacaccctgactaaagagagagaccacctACAGAGTAGTCTAAATACCAGAACCACTGAAATAGACAAGTTGAAGAAGAGTCTGAACACTACAACTATGGAGCGTGACCAGCTACAGAAGGAGATAGAAAGACTGAACTGGGAGAACAAAGGGTCCTGTCCTGAAGGATGGAGAAGGTTTGGCTGCAGCTGTTACTTCCTCTCTACTGAGAGGAAATCCTGGGAGGAGAGTAGACAGgactgtctggagagaggagcagatcTGGTGATCATTAACAGTGAAGAGGaacagACATTCATCAATGGGTTTAAATCAGTCAGTTATgtctggattggtctgactgactctgttactgaggggacctggaaatgggtggacggcaccccactgaccaccccaagGTATTGGTGGAGTGGAGAGCCTGGTGGTGGTACGTACCAGAACTGTGGGGAAATCTATTACATATCGTCAGGCCAAGGAGTATGGAGGGATTTGGGATGTTCGTTTTCACAAGAATGGATCTGTGAGAAATAGGCTTCTCATAGGTACTTTTAATGAACTCTCTACTGTATGTTAATGATGCTCTGTAGACTGGTGTGATTTGATAGAATGGTACTCTGAACTTCAGGTAGGAGAGAAACAAATGTTCacattcagacagacacacacacacaagaagacACTGATCTGAACCTGAGTCTCCCACAGGAGAAACCAACTTCTTCATTAGATAAGGAGGTAATCCTCTTGGGCCGAGAGCTGACACTGATTTTTGAAGTCGCAGGTTGGGCTGCCGCATCACGTGACCAGGAGCAACATGACTGACTACTGTCTGCTGCACAAGCTGACACACAATCATGTATTCATACTGTATGTCAAAAAGTGTGAATAAATAGGGGCATAACATCTGTAATCTAGAAGGACAAGACATCTCCCTGCCTCTTTAGGACAGTGAATTTTACAGTGTACATTTTAAAGGTCTACTCCTAAACTTGAAGAAAGAAAAACTGGTGTCAATAAGACATTGTGCCTTTTAAGACAGAGTGAATGTTACTATTTACATTTGAACTCATATCTTGTTCACTTCCTGTTTGTGGTGACAACACCAGAATGAAGGGTTGGATCATAACCATCAGTTATCAAAACAGTGTCTAAGGTTTTGCAACAAACAGGTCACGACCCCTGGTGACCTTTAATACAGGTAGTGATTAGATTCAACTGTTTTGAAAAGCAGATATTATTTAGCAAGTGAATGTAGTTGTTTAATGGTTGTATTATATttcagagggagagatagaatcccaaatgataccctatCCCCTTTGTATTGCATTCCTTTTggtgagtagtgcactataaagggaatggggtgtcatttgggattctCTCACAGCCAGAGAGTTAGGCCGAATACAGGGAGAGACAGTTTACGCACGACTCACCATGGCCCAATGGAGGCCCGTTGAGGCTCTTCAGTTGGCCATCCCAAGATCTCAACAAAATCACAACAAGGAAAACAAAAAGACTATCCAAACCAACCTGGTTGGGAGGCTACTTTCATATAGCTTCTCTGATCAGTAATTACCTGTCAATCATCCATGCCTGAGAGCAACAGGGTTGGGAGGCTACTTTCATATAGCTTCTCTGATCAGTAATTACCTGTCAATCATCCATGCCTGAGAGCAACAGGGTTGGGAGGCTACTTTCATATAGCTTCTCTGATCTGTAATTACCTGTCAATCATCCATGCCTGAGAGCAACAGGGTTGGGAGGCTACTTTCATATAGCTTCTCTGATCAGTAATTACCTGTCAATCATCCATGCCTGAGAGCaacagggttgggatcaattccatttaaaaaagGAAACGCCACATGTACGTTTAAACATTTCTTAGAAAAGATTACAATGCATAGTCTTGGAGGTTGGCAGTGAgctaccctgaaggagcagaTCCTGAGTGAAGTGTCATATTAAGTTAATAATATAGAACTGTTCTGTAGAATAGACCACATGTAAGTACAGTGTGAATCCAATTGGCACAATATCTGCTGATGCGATCAAATGATGTCACCACACTCAGGTTTCTTTCATGAACTGGCTTCGCTTCATATCCATTCAGTCAATTCAAGAAATAAACAGAAATTCCTATTTAACATTGTTTCTCATAGACAACTCCAACTTCCAATTTCAACATTCTCATTACATAGACAAGCTTTGAGGAAAATGTATTTCAGTTTATTCACtgtattgaaatggaattgaccctaaACCTGGTGCGAAATCACTTTCTTAAAGGCCCAGTCCAACAAGAACTTGGCCCTGGCTACTGCTGCCCCCTAGTGGTAGGATGTGAGACGTGGAAATAGACTTGATTTGTCCCAATCTCTCTTCCCACGACAagtttaaaagcattggattggtttAGGCATAGGCCATGGAACAAGTTTCCATACCTGGCATTTTCTTTCCAATttgacattttatttcacctttatttaaccaggtaggccagttgagaacaagttcaaatttacaactgcgacctggccaagataaagcaaagcagtgcgacacaaacaacaacacagagttacacatggagtaaaacaaacatacagtcaataacacaatagaaaagtctatatgcagtgtgCGCAAATTAGGTTTCCAAGAAGGGAAGTGAACACGTGCACACTACAGGAGAAGGGAGATATTGGCCCGCAACTTGTCGCATAAtccacatatctacctccattccTAACATTATTACACTGCGTCTCATACTAAATGTTGATTTTTTATGACAATTACAAAATGCAGAAAAATGGTTTGAAAGCATTTCTGTTGTGAAATGTTAACTAAAAAAGTAGACTCAGCAatatgacgtagatgcagaaagtaaaccgcatagtgggtcaatttcaacaacaactaagagcgttcttctctgctgttttggtgCCCTGGATACCACACTTTAAACAGCGTGATGCGAACCtgtgcacatgcgcagatactgtgtgtgactgcgAAGTGTTGCATCTCGTTAATCTCAATATCTCCGGTGCGGCCCGTGGCATCGTCATTTCACGGAGTCTACCTGGATGTGTTATATTTTCCTTGTGTCAAAATGACAGGTATATTTATCCATGGCTTGAGCAGGGAGGTCTGGATTGGACTTCAGCCATACAGAGGGAGTTTGGGAGTGGGTTGATCGgaccagtggtgtaaaaagtaccctattttcatacttgagtaaaagtaaagataccttaatagaaaatgactcaaataaaagta
>TU1054174
TCTGGAGTTAAACGATAACACTGACAATAATGTATTTTCTCTTAGTACTTCCTGCTCCAGACCAGCTGACTGTTGACTCAGTGGACACCACATCAGCTGCTGTTAGCTGGAACCAGCCACCAGGATTGGACCAAACCCAACATCAGTACCAGATCTCCTACCACTGTCCAGGGACAGAACCACACATCACTACCACATCTTCACACAGCATCACTCTCTCTGACCTGCAACCTGCTACTCAGTACTCTGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGCAAAGTCAACTGGTGTC
>TU1054173
AGCTGACTGTTGACTCAGTGGACACCACATCAGCTGCTGTTAGCTGGAACCAGCCACCAGGATTGGACCAAACCCAACATCAGTACCAGATCTCCTACCACTGTCCAGGGACAGAACCACACATCACCACCACGTCTTCACCCAGCATCACTCTCTCTGACCTGAAACCTGCTACTGAATACTCTGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGCAAAGTGAACTGGTGTCAACAACCTTCACCACAATACTTCCTGCTCCAGACCAGCTGACTGTTGACTCAGTGGACACCACATCAGCTGCTGTTAGCTGGAACCAGCCACCAGGATTGAACCAAACCCAACATCATTACCAGATCTCCTACACCTGTCCAGGGACAGAACCACACATCACTACCACATCTTCACACAGCATCACTCTCTCTGACCTGCAACCTGCTACTCAGTACTCTGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGCAAAGTCAACTGGTGTC

Function

NR:

description
fibronectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989393.1 False 4107 mRNA 0.43 7 77722258 77734491
TU1054174 False 298 TUCP 0.48 2 77722229 77725053
TU1054173 True 505 lncRNA 0.50 2 77722292 77725053

Neighbor

gene id symbol gene type direction distance location
LOC110534594 LOC106577279 coding upstream 89450 77360360 ~ 77632808 (+)
LOC110497185 LOC106610409 coding upstream 108845 77608058 ~ 77613413 (+)
LOC118936776 LOC106591138 coding upstream 285739 77420543 ~ 77436519 (+)
LOC118936779 LOC106596936 coding upstream 338963 77380331 ~ 77383295 (+)
LOC110519101 LOC106596936 coding upstream 371570 77344992 ~ 77350688 (+)
LOC118936778 LOC106594846 coding downstream 202988 77937479 ~ 77946437 (+)
LOC110498611 LOC106610517 coding downstream 297143 78031634 ~ 78053204 (+)
LOC110497216 LOC106610535 coding downstream 319163 78053654 ~ 78057090 (+)
LOC110512491 LOC106610534 coding downstream 322858 78057349 ~ 78067236 (+)
LOC110497220 NA coding downstream 332829 78067320 ~ 78070325 (+)
G926510 LOC106592789 non-coding upstream 61424 77647553 ~ 77660834 (+)
G926511 LOC106610539 non-coding upstream 64174 77575096 ~ 77658084 (+)
G926455 NA non-coding upstream 174137 77495313 ~ 77548121 (+)
G926497 NA non-coding upstream 240951 77467821 ~ 77481307 (+)
G926562 NA non-coding downstream 6856 77741347 ~ 77744132 (+)
G926509 NA non-coding downstream 10379 77744870 ~ 77745647 (+)
G926563 NA non-coding downstream 11430 77745921 ~ 77746546 (+)
G926564 NA non-coding downstream 12175 77746666 ~ 77747576 (+)
G926457 LOC106598223 non-coding downstream 16289 77750780 ~ 77752043 (+)
G926448 LOC105024706 other upstream 426249 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 838016 76869703 ~ 76884980 (+)
G924927 NA other upstream 2162659 75557460 ~ 75562892 (+)
G924916 NA other upstream 2196458 75523358 ~ 75525800 (+)
LOC110497229 LOC106602251 other downstream 785541 78519650 ~ 78533161 (+)
G927061 LOC106602167 other downstream 1041444 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 1318000 79023569 ~ 79065796 (+)
G927584 NA other downstream 1465790 79200281 ~ 79202981 (+)
G927606 NA other downstream 1546895 79281386 ~ 79284144 (+)

Expression


Co-expression Network