LOC118936774 (LOC106610528)


Basic Information

Item Value
gene id LOC118936774
gene name LOC106610528
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78147469 ~ 78175162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118936774
ctctctttctgtggcTTCACACAGGTTGTTCGACTTGCAAGACAGCAGGAGAAATGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGTCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGCCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGCCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACAAGTCCTCTTCAGGATTGTGAGACCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGGGGGCTGAGGGTGAAGCCATCCCTAAAAAAAGACGTAAAGTTGGGTCACCAAACAAGGATCTTGTTGAGACCATGGACCCTGATATGAAGAGGTCTTGTACTACTAGGGGCCCTCCAGAGAGCACAGAGTCTATTTCCTCTGGTTTTCTATCAATGACGACTGACAAATCCATGGATTTCCCTCTTAATTTCAAAGGAGCAGACTCTCTACAAAACAAAGGGCCAGGAGAGGTACCCTGTGATATCTGCTCTGAGGTCCAAGCTGTGAAGTTCTGTCAGACCTGCAGTGTGTCCTACTGCGGGGCCCACATCAGACAGCACTATACAATACCTaaactacagaaacacacactggTGGATGTGACTGGAGACCTGGTGCAGAAACTCTGTCAACATGTCTACAGTCCTCTGGAGGTGTTCTGTAGGACAGACCAGATGCTGATCTGCAGTCAGTGTGCAGAGACAAACCACAAAGGACATGATATGATCTCCCATGAGATAAAGAATGCAGGAAGACAGCCTAAGAGTTTTGATAGAGACCAACACACAACGTTGGCCGCAGATGATGTGCTGCCCCCTCCTGGTGACATCCAGGTCCTGTTGCTGACATCAGACTCTGTGTCTCTGAGCTGGGGTCCTCCTGAAGGGTTGAAGGGACCACAGAAGTTCAGAGTGACCTGGGGTTGTGACGTGGAACCGTGCAGTATAGGGGTGAAACATGTTCATGAAGTTGAAATAAGCAGACTCAACCCTGGTAAAAAGTACCAGTTCAGTGTGGCTACAGAGGGAGAAGATGGAAGCCAAAGCAGATGGAtctcagcatccctatccgcAGTACCCCCTGTTCCAGACCAGCTGACTGTTGACTCAGTGGATACCACATCAGCTGCTGTTAGCTGGAGCCAGCCACCAGGATTGGACCAAACCCAACATCATTACAAGATCTCCTACCGCTGTCCAGGGACAGAACAACACATCACTACCACATCTTCACACAGCATCACTCTTTCTGACCTGCAAGGTGGTACTCAGTACTCCGTCACTCTCTGCACTGTGCTGGAAGATGGAAGGCAAAGTCAACTGGTGTCAACAACCCTCATTACAAGATCCTATCTGATGGATCTGTTGTCAAAGACTGGACTGGAAGATCATTATGAAAACAAGCTGACGTTAAGTACTGTCCTTGAGATAAATGCTGATACTACATCAGATGAACCTCTTACCACTATGCAGGCACTTCCAGGGGCCTTCCTGAAGAAATTAATGATGGCAAATCTGAATGCTAGGAGTGTCAAATGTATGTCCTCTGACACAGATGTTTCATTTCCGGGTACAGACCGTTTTGAGAATCTAAAAAGTGACTCTGCTAACAGCGATGTCATTAATCCACTGGACCTGATAACTGCCCTGTTTCTGTGTTCAGATGGTTTCCTGCAGCAGGAGATGGTCCAGAAAATGTCCATCTGTCAGTTTGCTGTTCCTCTGCTGCTGCCCAACTGTGACACAGAACAAAGCACTTTGATGCTGTGGGCCTTGAGGGACATAGTGAAGAAGTTTAGACTCTCTTCCCAAACATCCACAAAGGCTTTTGTGGAGGAGAGAATTGTACTCTCTGATATTCCCATGGTGTCCTTTGTTAGGTTAGGTGAGATTAGAGTGTCCAAGTCTCAGATCTTGAACAAGTTGCTTAGTAACCCTCAGCAGTACCATGACACATTTGTTCATCATGATATGGAATGTGGCGACATCCCCCATAGAATTTCAGATGGTCTGGTTGAAATCAACTGGTACCTTCCATGTGGGAACAGAAACATAGACATCTTCACTAAGCCTATGGTGGTGGCCAATCtcagaggagacatcaggtcctTTAAAACACAGTTCTCCTTTCTGTGTCAAACATCAGCTGCAGTTTACATTTTCACTGATGATTTAAAGGCAGATCTCAATTTGTTGAAAAGCAAAAACACAAAATCAGAGTTATTTCTGGTCGTCAACTCTCAGAGAAAATCATTCAGAGTAGACACATTAAAACAAATGATCACAAACTGCAGTATCAATGAGCAAAATGTGATTGTTAAGAAAAAGAAAAACGATGCAGAATTTGTCAAAACGCTGCAATCATCTGTTGGTGACATCATTGAAAATAGTCCAGACCGGTTGACAGTGGAAAACATGACTGACATAGCTCGTCACAGTGGGATTCTGGTTGATGAAGACCGCCATGACTGTCAGAGTGCCAGGAAGATGGCAGATGAAATCACCAGCAACATCACAGACACAGTCAAATTTAAAGACAAACAGCTACCCTTACAGGGGCAAATCTGGAAAGAGCTTTCCCAGTTGGAGAAAGAGCGATGTAGGCTGAGAAAAGCAGGGGATCAAGACATTGAACACTACAGGAGCTCTCTGAATACAAAAGAGGAAGAGCTGAGAAAGAAACAATATACATTTGACATGTCAGATGCAATGGAAAGCTTCATTTCAGGATTGTCAGGTTCAGGACCTGAGCGTTCCTATTTCCTCAAATGGATGCGGATAAATCTGGACAATCTGTCACCAAAGAACCTGTCTGCTTTGCGGGACCAGTACAAAGATCTTTGCCAATATTCTCCGGAGAGAAAAGACGACATTAAAGATTTGGATAAGCAATTATCTGACTGTTCCTTGGGTCTTGAACACTTCCTGCGTGAGTTGGGCCAGTTATATGAAGCTGTCTGCTCCCTCCCTGAAGACAGTCCTAAAAGGAAACAGATGGAGCATCTCCCTGGATTGTGTGCTCAGATGCTGTTGGATGGTTTCCCCATTGAGCTTGTGGATGGAGATGCATCATATATCCCTCTGAAATGGATATCAGCTGTTCTGACTGAGCTTCATAATCTTGTGGGCTCTAACAGCAAGATCCTGGTTGTCTCAGTTTTAGGGGTCCAAAGCACTGGGAAGTCCACTCTCCTCAACACCATGTTTGGGGTCCAGTTTGCTGTCAGCAGTGGAAGATGCACCAGAGGGGCCTTCATGCTACTGATTAAAGTCAACAAAGAACTCAAGGAGGAGCTGAAATGTGACTTCATCATGATCATTGACACAGAGGGGTTGAAATCACCAGAGTTGGCTCAACTAGATGATAGCTATGAACATGATAATGAACTGGCCACACTGGTGATAGGACTCAGTGATGTCACTATCATCAACATCTCCATGGAGAACTCCACAGAGATGAAAGACATTCTGCAGATTGTTGTTCATACCTTCCTCAGGATGAAGGAAGTGGGGAAGAAGCCGATATGTCATTTTGTGCACCAGAATGTGTCAGACATGTCTGCTCATGACAACAACATGAGAGAGCGGAAGAAGTTGTTGGAACAGTTGAATGAAATGACCCAGGCAGCAGCCAGAATGGAGAAGAAGGAGAATATCACCAAGTTCACTGATGTGATGAAGTATGATCCAGACACTAGCAGCTGCTACATCCCAGGACTCTGGCATGGGACTCCCCCTATGGCTCCAGTCAATGCTGGCTACAGTGAGGCTGTGTATGATTTCAAAAAGAGCTTGATGCAAGACTTAATCAAATGCCAGAGTAATGATGACATGACACATTTCCTGAAGTGGACAGAAAGCTTGTGGGAGTCTGTCAAATTGGAGAAATGAATTTTCAGTGTCTGAAACAGCTTGGTTGCAGATGCATACACCAGTTAATGCTTTAAGTACAATGGTTGGGAACGGTTCTTCAAGAAGGACATTTATTCCTGGATAATGGGTGCTGAAAGCAGAATATAAAACAGATCCAAACCCCCAAATGAGCATATGAATCGTGCTGAAGGACTTGTCCTGTCATCCCAATGGTGGATGCAGTTTATTACCGTCACTAGGACAGCAGAATCCCTGCCCATCAGGTTCTAAGTGTTCTAAGTTAccagttagaatagtagaatacacaaggtgcaatttagaaatgtggttttatatcagcagtttttctcttgttatgcaagtcactgacagtcagtcatttagcccatgtcagcaaaacaaagatTGCTAAGTTAGTttagcggccagctatctaaactatTATGGTTGAATTACCTGCTGGGGTCTCCTATTGATTTTGTCAGTCTAACGCCgatattatataaaaaaaatgtaattaaaaaatgATATtatattaaatcaaatgtatttataaagctcttttacATTAGCAGATAATTATACacaaacccagcctaaaagcccaaacagcaagcaatgcagacgtAGAGTCATGGTGGCTAGaacaaactccctagaaaggcaggaacctaggaagaaacctagagaggaaccagtcctcttctggctgtgctgggtggagataaTAATCATACTGTTGACTACTAGTTGACTTGGACTGGAGTATGAAGACAAATCTCAACATTAGAAAAAATACATTCATATAATTTGTATAAACAGCTGGATTAAAATTAAATGAAGATTATGCTCATTGGGATGAATTTAATGAAACAAGGATATCTATTTACAAGAGGGAAGTGTAACTAATTATGAAAGAAAGGTCATTTTGTTTGTTTGAGGTTCGATATTGTATATTATCTTTGGTTTGATTCAGTTTTATCTTGTATACCATTCATACAGTCTTTGAAGGACTAGCCCAGTGATGGACTAAAGGGGTCCATAGATCAGTGCAGACTGTACATACTGTGATTGTAAATATTGTCCATTAGATTTACATCCATAGAgatgtgattctatatgtaatgcTATGTTTTACACCTTTACAAAAAGCCTCTGAAACAGATACATACATACTTGTTTAAGGCTTTTGTATGTTTGTAAGCAGAGAACATCTTAGTCCTCGTCTTTAGAAAGGAAGTTGCATTAAGGGCTACTTTAGTTGCATGCATGTTAAAATATTCATTTCCGTCATGTAACAAGTTCATTATTCCATTGTCTGTTTATTTGCCTGAGATTTGTCAAATGTAAAGAATGTATACACATCTGAtttcataaaaaaatatctgCATTATTTTACTTTAGAAAAATGCATAACCAATGATTCATCACCTACTTAACATCAACATTTATCATTGAAATAATTTTTATATATCTAATTCCAGCATTATTTTATTGTAGAATAATCCATGTATCATATCCTATGATTATCCTATGATTAATCTACTTATCATCATCATACTAACAACGATGTATACCACTTATCATTGAAGGACTTTTTAAATAAAA

Function

NR:

description
up-regulator of cell proliferation-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118936774 True 5601 mRNA 0.42 8 78147469 78175162

Neighbor

gene id symbol gene type direction distance location
LOC110518069 LOC106610529 coding upstream 5963 78118510 ~ 78141506 (+)
LOC110497220 NA coding upstream 77144 78067320 ~ 78070325 (+)
LOC110512491 LOC106610534 coding upstream 80233 78057349 ~ 78067236 (+)
LOC110497216 LOC106610535 coding upstream 90379 78053654 ~ 78057090 (+)
LOC110498611 LOC106610517 coding upstream 94265 78031634 ~ 78053204 (+)
LOC110518385 LOC106597144 coding downstream 40225 78215387 ~ 78247524 (+)
LOC110497212 LOC106610528 coding downstream 90308 78265470 ~ 78289833 (+)
LOC118936780 LOC106610496 coding downstream 138051 78294588 ~ 78331698 (+)
LOC118936781 LOC106610525 coding downstream 180599 78355761 ~ 78384072 (+)
LOC118966656 LOC106610525 coding downstream 213861 78389023 ~ 78432765 (+)
G926847 NA non-coding upstream 99054 78043606 ~ 78048415 (+)
G926846 NA non-coding upstream 103992 78043214 ~ 78043477 (+)
G926845 NA non-coding upstream 104378 78042662 ~ 78043091 (+)
G926829 LOC106610489 non-coding upstream 133340 78004868 ~ 78014129 (+)
G926826 NA non-coding upstream 147474 77997431 ~ 77999995 (+)
G926867 NA non-coding downstream 8963 78184125 ~ 78197726 (+)
G926871 NA non-coding downstream 33270 78208432 ~ 78209231 (+)
G926903 NA non-coding downstream 120658 78295820 ~ 78298290 (+)
LOC110510687 LOC106591138 other upstream 422416 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 693554 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 851460 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1263227 76869703 ~ 76884980 (+)
G924927 NA other upstream 2587870 75557460 ~ 75562892 (+)
LOC110497229 LOC106602251 other downstream 344870 78519650 ~ 78533161 (+)
G927061 LOC106602167 other downstream 600773 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 877329 79023569 ~ 79065796 (+)
G927584 NA other downstream 1025119 79200281 ~ 79202981 (+)
G927606 NA other downstream 1106224 79281386 ~ 79284144 (+)

Expression


Co-expression Network