LOC110518385 (LOC106597144)


Basic Information

Item Value
gene id LOC110518385
gene name LOC106597144
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78215387 ~ 78247524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934039.1
GATACAGGACTAGACCAGTCCTCTTCAGCATTGTGAGGTCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGGGGGCTGAGGGTGGAGCCATCCCTAAAGAAAGATGTAAGGATGGGTCACCATACAAGGATCTTGATGAGACCATGGACCCTGATATGAGGCCTTGTACTACTAGGGACCCTCCAGAGAGAGCAGAGTCTATTTCCTCTGGTTTTCTATCTATGAAGAGTGAGCAATCCATGGATTTCCCTCTTAATTTCAAAGGAGCAGACTCTCTACGAAACAAATGGCCAGGAGTGATGGTCTGTGATATCTGCTCTGAGGTCCAAGCTGTGAAGTTCTGTCAGACCTGCAGTGTGTCCTACTGTGAGACCCACATCAGACAACACTATACAATAGCAAcactgcagagacacacactggtgGATGTGACTGGAGACCTGGGGCTGAAACTCTGTCAACATGTCTACAGTCCTCTGGAGGTGTTCTGTAGGACAGACCAGATGATGATCTGTAGTCAGTGTGCAGAGACAAACCACAAAGGACATGATACCATCCTCCTTGAGAAAAAGAAAGCAGGAAGACAGCGTAAGAGTTTTGATGGCGACAAACAGAAAATGCTGGCCTCAGATGATGTGCTGCCCCCTCCTGGTGACTTCCAGGTCCTGTTGCTGACGTCAGACTCAGTGTCTCTGAGCTGGAGTTCTCCTCAGGGGGTTAAAGGACCCCACAAGTTCAGGGTCATCTGGGATTGTGATGGGGAAACAAGCTCAACAAGAGTGAAAGGCGGGTATCATCTTAAAATAAGCAGTCTCCAACCTGGTGAAAAGTACCAGTTCAGTGTGTCCACAGAGGGAGAAGATGGAAGACAAAGCAGATGGATCTCAGCATCTGTATTCACAGTGGTTCCACCCAGAGACTTAAAGGTAGACAATTTGAAATATACCTCCTTCACTCTCCACTGGACTAAGGCTGAAGGAATGGAGAAAGTTCCACAACGCTTCCTCATATCCTACTGCAGCTCAGCAACAGACCTCCATGCAGAGAATACTGAAGACTGTCACACAACATTCTCAAACCTGCAACCTGGTACTGAGTACACTGTCAGCATCTCAACTGTGCTGAACAATGGGGAAGAGAGTGAACCTGTCTCTACAACCATCTGCACTATACTTCCTGCTCCAGACCAGCTGACTGTTGACTCAGTGGACACCACATCAGCTGCTGTTAGCTGGAACCAGCCACCAGGATTAGACCAAACCCAACATCATTACCAGATCTCCTACCACTGTCCAGGGACAGAACCACACATCACTACCACATCTTCACACAGCATCACTCTCTCTgacctgcaacgtggtactcaGTACTCTGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGAAAAGTCAACTGGTGTCAACAACCCTCACCACAGGATCCTGTCTCATGGAGCTGTTGTCAAAGACTGGACTAGAAGATCATTATGAAAACAAGCTGACGTTAAGTACTGTCCTTGAGATAAATGCTGATACTACATCAGATGAACCTCTTACCACTATGCAGTCACTTCCAGGGGCCTTCCTGAAGAAGTTAATGATGGCAAATGTGAATGCTAGGAGTGTCAAATGTCTGATCACTGACCAGGAGGCTTCCTATGATGATGTAGACAACCTGGACACTGACTCTGATACTAGTGATGTCATTAATCCACTGGACCTGATCACAGCCCTGTTTCTGTGTTCAGATGGTTTCCTGCAGCAGGAGATGGTCCAGAAAATGTCCATGTGTCAGTTTGCTGTTCCTCTGCTGCTGCCCAACTGTGACACAGAACAAATCACTTTGATGCTGTGGGCCTTGAGGGACATAGTGAAGAAGTTTAGATCCTCTTCCCAAACATCCACAAAGGCTTTTGTGGAGGACAGACTTGTTGTCTCTGATATTCCTATGGTGTCCTTTGTTAGGATAGGAGAGAGTAGCTTGTCCAAGTCTCATATTTTGAACAAGTTGTTTAGTAACCCTCAACAGTACCATGACACTTTTGTTCATCATGATATGGAATGTGGAGATGTCCCTTTGCAAATCTCAGATGGTCTGGTTGAAATAAGCTGGTACTTTCCCTGTGGGAACAAAAACACAGACATGTTCACCAAGCCTGTGGTGGTGGCCAATCtcagaggagacatcaggtcctTTGAAACACAGTTCTCCTTTCTGTGTCAAACATCAGCTGCAGTTTACATTTTCACTGATGATTTCGAGGCCGATCTCAAGGTTTTGGAAGGAAAAATCACAAAAGCAGAGTTATTTCTGGTTGTCAACTCTCAGAATAAAACATTCAGGGTGGACACATTGAAGAAAATAATCACAAACTACAGTATCAACCCAACAAATGTGAttgtgaagaagaagaaaaatgatGTACAATTAGTCAAAACCCTGCAGTCCTCTGTGGGTGACATCATTGAAAAAAGTAAAAACAGATTGACAATTGAAAACATGGTTGACGAGGCTCATCAGTTTGGGATTCTGGTTGATGAAGACAGGGATGAGTGTCAAAGTGCCAGGAAGACAGCAGATGACATCACCAGGAACATCACAGACACAATGAAATTCAAACATGAACAACTACCCTTACAAGGAACAATCTGGAAAGAGCTTTCCCagttggagaaagagagatgtagactGAGAAAAGCAGGGGATAAAGACATTGAACACTACAAGAGCTCTCtgaagaaaaaggaggaagagctGAGAGAGAAGCAAAATAAATGTGACATGTCAGATGCAATGGCAAGCTTCATTTTAGGATTGTCAGGTTCAGGAGCTGACCGTTCCTATTTCCTCAAATGGATGCGGATAAATCTGGACAATCTGTCACGGCAGAACCTGTCTGCTTTGCGGGACCGGTACAAAGATCTTTGCCAAAATTCTCCCGAGAAAAAATACCAAATTAAAGATTTGGATAAGCAATTATCTGACTGTTCCTTGGGACTTGAACACTTCCTGCGTGAGTTGGGCCAGTTATATGAGGCTTCCTGCTCCCTTCCTGAAGACAGCCCTCAAAGGAAACGGATGGAGCATCTCCCTGGATTGTGTGCTCAGATGCTGTTGGATGGTTTCCCCATTGAGCTTGTGGATGGAGATGCATCAAATATCCCTCTGACATGGATATCAGCTGTTCTGACTCAGCTTCATACTCTTGTGGACTCTAACAGCAAGATCCGGGTTGTGACAGTTTTAGGGGTCCAAAGCACTGGGAAGTCCACTCTCCTCAACACCATGTTTGGGGTCCAGTTTGCTGTCAGCAGTGGAAGGTGCACCAGAGGGGCCTTCATGCTGCTGATTAAAGTCAACAAAGAACTCAAGGAGGAGCTGAAATGTGACTTCATCATGGTCATTGACACGGAGGGGTTGAAATCACCAGAGTTGGCTCAACTAGATGATAGTCATGAACATGACAATGAACTGGCAACGCTGGTGATAGGACTCAGTGATGTCACTATCATCAACATCGCCATGGAGAACTCCACAGAGATGAAAGACATTCTACAGATTGTTGTTCATGCTTTTATCAGGATGAAGGAAGTGGGGAAGAAGCCGATATGTCATTTTGTGCACCAGAATGTGTCAGACATGTCTGCTCATGACAACAACATGAGGGACAGAAAGAAGTTGCTGGAACAGTTGAATGAAATGACCCAGGCAGCAGCCAGAATGGAGAAGAAGGAGAATATCACCAAGTTCACTGATGTGATGGAGTATGATCCAGACACAAGCAGCTGCTACATCCCAGGACTCTGGCATGGGACTCCCCCTATGGCTCCAGTCAATGTTGGATACAGTGAGGCTGTGTATGATTTAAAAAAGAGCTTGATGCAAGACTTAATCAAATGCCAGAGTAATGATGACATGACACATTTCTTGAAGTGGACACAAAGCTTGTGGGAGGCAGTGAAGTTTGAGAAATTCATCTTCAGTTTCAGAAACAGCTTGGTTGCAGTTGCATACTCCAGATTATGCTCTGAATACAGTGGTTGGGAATGGGCCTTCCAGAAAAATATGTATTCCTGGATGGTGGGTGCTGAAACTAAAATATCCAATATTATCATGACAGATCAACATCCCCAGAGGTCCATAAGAGATGTGCTACAAGACTTGATGATAGAAGCATCTATGAAGATGTCATTGGGAGAAAAGGAAATTCAAGACAATCTAGTGAAATACTTTGAAAAGCAAGATGGCCATGTCAATCTGGTGGAAAAATACAAGGAGGACTTTATGTCCAGTGCCAAAACACTGAGacgagagacagaaaacacagtgAAGAACAAACTGCAAGGAGCTGTTGAGATCAAAGAGGGGATGACAGAACTGAACAAAATCAAGAGTTCTCAGACAAGTACAATGGAAAAGAAGGTTCTGACTCTGCTACAGAACTGTAAAAAGAAAGAATCTGTTCTATCAGATGCGGCCCTCAGTGAAGAGTTTGAAAACATGTGGAAGGAAACTCTGTCTGAGATATACTTCAAAGGACTCCCTAGAAGAGATGTGGCTCAAGATGCCTTCCTTATGTTAAATGGTAATCTGTCAACAAGGGGTGGGCATGTCAATAGTATGTTGGTTAGAAACAACCTGGTGGATTGTGGTAAAAGAGAATTTTCTGTGGAATCTGAGGGTTTAGGGAAGATATTTGGGGGCTTAGTTAAGCACTGGGACACCAACCATTACAGGAAGAAACTACTAGAGTTGTGTGATGACATCATAACACAGTGTCAGTTGTTTATAACCCAGAAGGTGGAAAGCAAAACAGATTACCATGATACTTACATCAAAGAGCTGCTGAACAAGATTGATGTTACATTACAACAACACAAGAATGTTAAAATCAGTGAGGAATGTGAGGTTTCTCTGAAGCTACACATCTGTGGCAGAGCAGCCATAGAGTTTCAGAAGATGCATGATGATTTTATTGAAGTCAATGACCCAAGGAAGTGTCTGGAACAGTCTAAGAGCAAGTACCTTACTGAGTTCAGAGACTTGTTTCATAACCGAGACCAGTGCCTTTAAGAAAGCTGAGGACTTCACAAAGCTCTGTCTACAGCCAGCTGTACAGGACTATGTGACCAAAATGATTGGTCCTGATGTGGTTGATGAAGTGAAGACAGGTGAAGGGTCAGAGGATTACAGCACCCGAGGGGCTTTCAAGTTCTCCATTTTAAAACAACTCCTGACAGATGGAGAATATGAGAAATGTAAAGGGAACATGATCTCCCAGAGGACTGGAAGGCATTAACAACTCATGATGTAATGAAGAGCTTGAAAGAGCATTTCAACATGAAATAAAGTGGAGTTCTACTGTATATAATTACTCTTGTTCACCAACATGTTACCATATAACTGAACATTCAAAGACTTGACAACCAGAAATAACTCTCATGACATGTCACAGATTCAAACTGTAAGGAGCCAGTCGCCCAGACTTGTTGAAATAATGTGCAGATCTGGAAATACACAACTGGATCACAGAAAGTCATATTTACAATTACATTCATAAACTATATGACCTGTTAGCAATATACAGATCTGATGTTCCATAATGAAATAGCTAACATGTTGAGTTGTATGTCAAAGGAACACAATATTCTAATCTAAGTACATCTATACAACTCATGATGTAGTAAGAAAATCATTATTAATAAATGTAGTaatcaaacacatggaagaaAAGTAAATGTGACCATCAATAGGTTAACCAACAGATTGAGCCTTTTTGACCTTATTAACACAATATACAGGTAACTAATGAGCTAGTCTGACATTGTTTATTTTAAATTTTCTTTCCATCTGTCCTACAGTAGGGCTTGATATGCCTTAATCCCAGATTATGAAGGATCATCATTTAGTGGTGGACTTTCCCTTTGTGTTTATTTGTTATTTGACCTTTTACTTTTTCATCTTAATGTCATTTTTTATGTAGAGAATAATTTGTGGTTTCATATACAGGTTTTACACATGTATTGGTCTCTTAAATAATTTACTTCAAGAATGATTACTACGTAGACTTTAAATCTGTTTTTAATGGATCACACCTTCTAATAGTGATTTGTTCAATGACTTCATTGCTTTGAAGACATTAGTTTGGATACAGTGTAATTCATAATCAGTGAACATCAGTAATGCAACTTCATTAAAACTCTTCATGGATGcttgatatacactaccgttcagaagtttggggtcacttagaaatgtccttgtttttgaaagacaagcaattttttttgtccattaaaataacatcaaattgatcagaaataaa
>TU1054569
TTATGTAGAGAATAATTTGTGGTTTCATATACAGGTTTTACACATGTATTGGTCTCTTAAATAATTTACTTCAAGAATGATTACTACGTAGACTTTAAATCTGTTTTTAATGGATCACACCTTCTAATAGTGATTTGTTCAATGACTTCATTGCTTTGAAGACATTAGTTTGGATACAGTGTAATTCATAATCAGTGAACATCAGTAATGCAACTTCATTAAAACTCTTCATGGATGcttgatatacactaccgttcagaagtttggggtcacttagaaatgtccttgtttttgaaagacaagcaattttttttgtccattaaaataacatcaaattgatcagaaataaagtgtagacattgttaatgttgtaaatgactattgtagctggaaatggttgatttttttatggaatatctaggcgtacagaggcccattatcagaaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttataattttaaatggctaattgatcattagaaaacccttttgcaattttgttagcatagctgaaaactgttgtcctgatttaaagcaataaaactggccttctaaagactagttgagtatctggagcatcagcatttgtgggtttgattacaggctcaaaatggccagaaacaaagacctttcttctcaaactcatcagtctattcttgttttgagaaatgaaggctgttctatgcgagaaattgtcaagaaactgaagatctcatacaatgctgtgtactactcccttcacagaacagagcaaactgtctctaaccaggtagaaagaggagtgggaggccccggtgcacaactgagcaagaggacaagtacattagagtgtctagtttgagaaacagacacctcccaagtcctcaactggcagcttcattaaatagcatcctcaaaacaccagtctcaacgtcaacagtggagaggcgactccgggatgctggacttctaggcagagtttctctgttcagtgtctgttctttttcccctcttaattttttcttcttattggccagtctgagatagggctttttctttgcaagtCCTCaattacccccaacagcccaactccagtccccctgtacccccaacagcccaactccagtcctcctgtacccccaacagcccaactccagtcctcctgtaccctcaacagcccaactccagtcctctagtaCCCCCTGTTAGAGCTGATTTGGACATATTTGTATAAAAGACTGAACATACGGAGCTCCATGTATATTTGtgtaaatatattaaatatgAATGTATATGATGGAATATTAGGTACGTACCTTTTTATGATTTATATTTACCTGATTGAGATATATTAATTTGTTAGTGTAACTCAGTTTTTGGCCCCCCCTCTTGCCCATTCATTGTATTGTGGTAAGTGTGTTAGGATAAAGGCAGGAAGTTGGACATTCGGGGGAGGGAGTCCTTGCTAGATGCGGGAGCGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934039.1 False 6329 mRNA 0.42 8 78215387 78246338
TU1054569 True 1505 lncRNA 0.39 2 78245989 78247524

Neighbor

gene id symbol gene type direction distance location
LOC118936774 LOC106610528 coding upstream 40225 78147469 ~ 78175162 (+)
LOC110518069 LOC106610529 coding upstream 73881 78118510 ~ 78141506 (+)
LOC110497220 NA coding upstream 145062 78067320 ~ 78070325 (+)
LOC110512491 LOC106610534 coding upstream 148151 78057349 ~ 78067236 (+)
LOC110497216 LOC106610535 coding upstream 158297 78053654 ~ 78057090 (+)
LOC110497212 LOC106610528 coding downstream 19132 78265470 ~ 78289833 (+)
LOC118936780 LOC106610496 coding downstream 66875 78294588 ~ 78331698 (+)
LOC118936781 LOC106610525 coding downstream 109423 78355761 ~ 78384072 (+)
LOC118966656 LOC106610525 coding downstream 142685 78389023 ~ 78432765 (+)
LOC118936487 LOC106602251 coding downstream 199407 78445745 ~ 78452257 (+)
G926871 NA non-coding upstream 6156 78208432 ~ 78209231 (+)
G926867 NA non-coding upstream 17661 78184125 ~ 78197726 (+)
G926847 NA non-coding upstream 166972 78043606 ~ 78048415 (+)
G926846 NA non-coding upstream 171910 78043214 ~ 78043477 (+)
G926845 NA non-coding upstream 172296 78042662 ~ 78043091 (+)
G926903 NA non-coding downstream 49482 78295820 ~ 78298290 (+)
G926922 NA non-coding downstream 89425 78335763 ~ 78336007 (+)
G926942 NA non-coding downstream 156041 78402379 ~ 78417821 (+)
G926910 NA non-coding downstream 189318 78435656 ~ 78436322 (+)
LOC110510687 LOC106591138 other upstream 490334 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 761472 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 919378 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1331145 76869703 ~ 76884980 (+)
G924927 NA other upstream 2655788 75557460 ~ 75562892 (+)
LOC110497229 LOC106602251 other downstream 273694 78519650 ~ 78533161 (+)
G927061 LOC106602167 other downstream 529597 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 806153 79023569 ~ 79065796 (+)
G927584 NA other downstream 953943 79200281 ~ 79202981 (+)
G927606 NA other downstream 1035048 79281386 ~ 79284144 (+)

Expression


Co-expression Network